YRC Public Data Repository - Protein Structure Prediction

Protein:	rad31
Organism:	Schizosaccharomyces pombe
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad31.

Description	E-value	Query Range	Subject Range
gi\|83756702, gi\|... - gi\|83815308\|ref\|YP_446148.1\| MoeZ/MoeB domain-contain protein [Salinibacter ruber DSM 13855], gi\|837...	257.0	[0..5]	[257..14]
gi\|114777472, gi... - gi\|114777472\|ref\|ZP_01452469.1\| molybdopterin biosynthesis protein MoeB [Mariprofundus ferrooxydans ...	254.0	[0..3]	[262..1]
gi\|106891733, gi... - gi\|148654884\|ref\|YP_001275089.1\| UBA/THIF-type NAD/FAD binding protein [Roseiflexus sp. RS-1], gi\|14...	251.0	[0..5]	[264..5]
gi\|48834858 - ref\|ZP_00291862.1\| COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine bi... gi\|71914656, gi\|... - gi\|72160924\|ref\|YP_288581.1\| molybdopterin biosynthesis-like protein MoeZ [Thermobifida fusca YX], g...	251.0	[0..4]	[263..11]
gi\|117928984, gi... - gi\|88931318\|ref\|ZP_01137012.1\| Rhodanese-like [Acidothermus cellulolyticus 11B], gi\|88912597\|gb\|EAR3...	251.0	[0..6]	[268..13]
gi\|86558065, gi\|... - gi\|86609523\|ref\|YP_478285.1\| hypothetical protein CYB_2075 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8... gi\|86609523 - gi\|86609523\|ref\|YP_478285.1\| putative molybdopterin biosynthesis protein MoeB [Cyanobacteria bacteri...	249.0	[0..5]	[257..10]
gi\|222526984, gi... - gi\|222526984\|ref\|YP_002571455.1\| UBA/THIF-type NAD/FAD binding protein [Chloroflexus sp. Y-400-fl], ... gi\|53796678 - ref\|ZP_00020762.2\| COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine bi... gi\|163849021, gi... - gi\|76258733\|ref\|ZP_00766387.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Chlorofl...	249.0	[0..1]	[257..1]
gi\|54018048, gi\|... - gi\|54026540\|ref\|YP_120782.1\| molybdopterin biosynthesis-like protein MoeZ [Nocardia farcinica IFM 10...	249.0	[0..5]	[282..16]
gi\|91203467 - gi\|91203467\|emb\|CAJ71120.1\| strongly similar to molybdopterin synthesis protein MoeB and thiamin bio...	248.0	[0..5]	[256..4]
gi\|35213984, gi\|... - gi\|37522981\|ref\|NP_926358.1\| hypothetical protein gll3412 [Gloeobacter violaceus PCC 7421], gi\|35213...	247.0	[0..5]	[257..10]

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Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNHNINAEE IALYDRQIRL WGFNAQQALK QSRVLLITAS PLANEIAKNL VLSGIGKLCV  60
   61 LDSMTVYEKD VEEQFFIEAS DIGQLRANVF KKKLHELNPL VEIDTDTSLI SEIDEGKISK 120
  121 FSMVIATQLD YEEFCRINEL TRICNASFYA TSCFGLYGFA FCDLINHNFA IDRVVDNTKV 180
  181 EEDMFIVQKP MKEAFQSILG ETLKPRLAKK IPTLYPAMLS LLKSKKSDPD SIRQVCIEQK 240
  241 LNEKTVLNGE FLSKFSSNIS FQWTPVMSVV GGVVSQDALN SISKKQFPID NFWIFDAESG 300
  301 LAPIYRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1y8qA
Description:	SUMO E1 ACTIVATING ENZYME SAE1-SAE2-MG-ATP COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits