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View Structure Prediction Details

Protein: rad26
Organism: Schizosaccharomyces pombe
Length: 614 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad26.

Description E-value Query
Range
Subject
Range
gi|435166, gi|542220 - pir||S42797 rad 26 protein - fission yeast (Schizosaccharomyces pombe), gi|435166|emb|CAA54058.1| ra...
1063.0 [0..1] [614..1]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMADESFDLE SLGSDEIFEG VNLDELEQQA QTQVQAQSSQ VVVPSEKQKQ NLNLPNSYTN  60
   61 SSQKVRESTV NSQASLSSND LRTELLIKSG ENAILRANLL KQSEANNAAL ESLNNSIKQK 120
  121 QDEYQRKLEE LKKEIEYAKT KSLFHEREAQ DAIETMKKMK RDVKNSPIMK KSHEEDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNKLLSSSDQ LAKSTKHAAK NSPSKKKRKT SVATAEDAST DSVSSSIAIS DASLSLSLMK  60
   61 DLLSLQKRED LYFSSRTLAY VFGGCMHSLE TIEGEEEGEC LFNNLKALIY SPDL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.809 a.121.1 Tetracyclin repressor-like, C-terminal domain

Predicted Domain #3
Region A:
Residues: [292-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMDSSNYVQS VVQTSSSILN YSMKKLLYNA SFAITSLFNA LLILDPKSST FIFQENVVSL  60
   61 ISGFLLKEYE KSNFLDSKFY VLIDFLYLYL SIARESADDF ANITKAVDPS LFESCIRVQN 120
  121 APSLIKCGVC LIISS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.855 a.29.9 Description not found.

Predicted Domain #4
Region A:
Residues: [427-614]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTPSFCASVN LLNADDKSQE SLMQLFTTMA HILVVTTRER INFPELNEWI TLHRFVISFF  60
   61 TVFIQMSGNI GKEILKVCNP LIVCIGLAIT WYHQQLLSSM YPQNECVEIL VSLVRLLYIL 120
  121 SSEDLSSKFM LAENALQPRF VYAIACCAFG DTEQKAFGNL GEEMYFLTTE LLEVCVSPEE 180
  181 LEQLYTNF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle