| Protein: | smc6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1140 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smc6.
| Description | E-value | Query Range |
Subject Range |
|
|
334.0 | [0..4] | [987..1925] |
|
|
296.0 | [0..4] | [973..923] |
|
|
296.0 | [0..4] | [973..925] |
|
|
295.0 | [0..4] | [973..925] |
|
|
295.0 | [0..4] | [973..924] |
|
|
295.0 | [0..4] | [973..872] |
|
|
295.0 | [0..4] | [973..923] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MTTELTNVSL EEAITEKTSE NRRKRDSDVL QTEEVDLSNV KRIRASRNQD NRPERQSRLQ 60
61 RSSSLIEQVR GNEDGENDVL NQTRETNSNF DNRV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [95-248] |
1 11 21 31 41 51
| | | | | |
1 GVIECIHLVN FMCHDSLKIN FGPRINFVIG HNGSGKSAIL TGLTICLGAK ASNTNRAPNM 60
61 KSLVKQGKNY ARISVTISNR GFEAYQPEIY GKSITIERTI RREGSSEYRL RSFNGTVIST 120
121 KRDELDNICD HMGLQIDNPM NILTQDTARQ FLGN
|
| Detection Method: | |
| Confidence: | 9.39794 |
| Match: | 1w1wA |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [249-632] |
1 11 21 31 41 51
| | | | | |
1 SSPKEKYQLF MKGIQLKQLE ENYSLIEQSL INTKNVLGNK KTGVSYLAKK EEEYKLLWEQ 60
61 SRETENLHNL LEQKKGEMVW AQVVEVEKEL LLAEKEFQHA EVKLSEAKEN LESIVTNQSD 120
121 IDGKISSKEE VIGRAKGETD TTKSKFEDIV KTFDGYRSEM NDVDIQKRDI QNSINAAKSC 180
181 LDVYREQLNT ERARENNLGG SQIEKRANES NNLQREIADL SEQIVELESK RNDLHSALLE 240
241 MGGNLTSLLT KKDSIANKIS DQSEHLKVLE DVQRDKVSAF GKNMPQLLKL ITRETRFQHP 300
301 PKGPMGKYMT VKEQKWHLII ERILGNVING FIVRSHHDQL ILKELMRQSN CHATVVVGKY 360
361 DPFDYSSGEP DSQYPTVLKI IKFD
|
| Detection Method: | |
| Confidence: | 14.522879 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [633-713] |
1 11 21 31 41 51
| | | | | |
1 DDEVLHTLIN HLGIEKMLLI EDRREAEAYM KRGIANVTQC YALDPRNRGY GFRIVSTQRS 60
61 SGISKVTPWN RPPRIGFSSS T
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [714-967] |
1 11 21 31 41 51
| | | | | |
1 SIEAEKKILD DLKKQYNFAS NQLNEAKIEQ AKFKRDEQLL VEKIEGIKKR ILLKRREVNS 60
61 LESQELSVLD TEKIQTLERR ISETEKELES YAGQLQDAKN EEHRIRDNQR PVIEEIRIYR 120
121 EKIQTETQRL SSLQTELSRL RDEKRNSEVD IERHRQTVES CTNILREKEA KKVQCAQVVA 180
181 DYTAKANTRC ERVPVQLSPA ELDNEIERLQ MQIAEWRNRT GVSVEQAAED YLNAKEKHDQ 240
241 AKVLVARLTQ LLQA
|
| Detection Method: | |
| Confidence: | 3.13 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [968-1140] |
1 11 21 31 41 51
| | | | | |
1 LEETLRRRNE MWTKFRKLIT LRTKELFELY LSQRNFTGKL VIKHQEEFLE PRVYPANRNL 60
61 ATAHNRHEKS KVSVQGLSGG EKSFATICML LSIWEAMSCP LRCLDEFDVF MDAVNRLVSI 120
121 KMMVDSAKDS SDKQFIFITP QDMGQIGLDK DVVVFRLSDP VVSSSALPPS TAP
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 2pzeA |
| Description: | No description for 2pzeA was found. |
