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View Structure Prediction Details

Protein: rpl1702
Organism: Schizosaccharomyces pombe
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl1702.

Description E-value Query
Range
Subject
Range
gi|73962156 - gi|73962156|ref|XP_850345.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...
287.0 [0..1] [178..1]
gi|114673108, gi... - gi|114673108|ref|XP_001152407.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi|114...
284.0 [0..1] [178..1]
gi|28189725 - gi|28189725|dbj|BAC56477.1| similar to ribosomal protein L17 [Bos taurus]
271.0 [0..1] [173..1]
gi|94396186, gi|... - gi|94396186|ref|XP_997169.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...
270.0 [0..1] [165..1]
gi|119626789, gi... - gi|88947792|ref|XP_947749.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 1 [Homo s...
267.0 [0..1] [165..1]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRYSAAPAL ETKCAKARGA YLRTHFKNSR EVAFTINGMN LKKAFIFLDN VKEHKQAVPF  60
   61 RRFNGGVGRT AQGKEFGVTQ ARWPVKSVNF FYDLLKNAEA NAEAKGLDMD KLIIKHVQVN 120
  121 AAPKQRRRTY RAHGRVTAYL SSPSHIEIIV AEEEEAVPKA NDTVSRVSLK QGAKARNLAA 180
  181 RKAITSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 1s1iN
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle