YRC Public Data Repository - Protein Structure Prediction

Protein:	rpt6
Organism:	Schizosaccharomyces pombe
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpt6.

Description	E-value	Query Range	Subject Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	317.0	[0..4]	[401..322]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	315.0	[0..6]	[402..325]
gi\|88950711, gi\|... - gi\|88950711\|ref\|ZP_01153285.1\| AAA ATPase, CDC48 [Methanosaeta thermophila PT], gi\|88929910\|gb\|EAR48...	314.0	[0..6]	[400..334]
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	312.0	[0..6]	[402..321]
gi\|73984095 - gi\|73984095\|ref\|XP_540960.2\| PREDICTED: similar to spermatogenesis associated factor SPAF [Canis fam...	310.0	[0..6]	[401..498]
gi\|10946660, gi\|... - gi\|4105619\|gb\|AAD02481.1\| SPAF [Mus musculus], gi\|10946660\|ref\|NP_067318.1\| spermatogenesis associat...	310.0	[0..6]	[403..497]
gi\|5106179, gi\|1... - gi\|5106179\|dbj\|BAA81490.1\| 699aa long hypothetical transitional endoplasmic reticulum ATPase [Aeropy... gi\|7435761 - pir\|\|B72479 probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1...	309.0	[0..4]	[402..290]
gi\|62643360 - gi\|62643360\|ref\|XP_342236.2\| PREDICTED: similar to spermatogenesis associated 5 [Rattus norvegicus]	308.0	[0..6]	[403..498]

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Predicted Domain #1

Region A:
Residues: [1-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVLKTNVL QSNENIVQYY TQKIQDAELA ILQKTQNLRR LEAQRNGLNA RVRLLREEIQ  60
   61 LLQEPGSYVG EVIKTMGKNK VLVKVHPEGK YVVDISPDID IKEIKPNIRV ALRNDSYQLI 120
  121 KILPNKVDPL VSLMMVEKIP DSTYEMVGGL EKQIKEIKEV IELPVKHPEL FESLGIPQPK 180
  181 GILLYGPPGT GKTLLARAVA HHTDCKFIRV SGSELVQKYI GEGSRMVREL FVMAREHAPS 240
  241 IIFMDEIDSI GSSRSDSSGG SGDSEVQRTM LELLNQLDGF EATKNIKVIM ATNRIDILDP 300
  301 ALLRPGRIDR KIEFPPPSAE ARAEILRIHS RSMNLTRGID LKSIAEKMNG ASGAELKGVC 360
  361 TEAGMFALRE RRVHVTQEDF ELAVAKVLNK GDSGEMSLQK LFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.30103
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits