YRC Public Data Repository - Protein Structure Prediction

Protein:	rpt1
Organism:	Schizosaccharomyces pombe
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpt1.

Description	E-value	Query Range	Subject Range
gi\|73981961 - gi\|73981961\|ref\|XP_533103.2\| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit, ATPa...	357.0	[0..10]	[434..481]
gi\|7489946 - gi\|7489946\|pir\|\|T39558 26S proteinase regulatory subunit 7 - fission yeast (Schizosaccharomyces pom...	327.0	[0..1]	[438..1]
PRS7_PRUPE - 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1	321.0	[0..13]	[436..3]
gi\|83773476 - gi\|83773476\|dbj\|BAE63603.1\| unnamed protein product [Aspergillus oryzae] gi\|220689986, gi... - gi\|238505286\|ref\|XP_002383872.1\| proteasome regulatory particle subunit Rpt1, putative [Aspergillus ... gi\|169780544 - gi\|169780544\|ref\|XP_001824736.1\| hypothetical protein [Aspergillus oryzae RIB40]	320.0	[0..1]	[436..1]
gi\|115385026, gi... - gi\|115385026\|ref\|XP_001209060.1\| 26S protease regulatory subunit 7 [Aspergillus terreus NIH2624], gi...	320.0	[0..1]	[436..1]
gi\|74354958 - gi\|74354958\|gb\|AAI02392.1\| PSMC2 protein [Bos taurus]	318.0	[0..10]	[434..31]
gi\|27735425 - gi\|27735425\|gb\|AAH41186.1\| Psmc2 protein [Xenopus laevis]	318.0	[0..10]	[434..19]
gi\|159127842 - gi\|159127842\|gb\|EDP52957.1\| proteasome regulatory particle subunit Rpt1, putative [Aspergillus fumig... gi\|119492632, gi... - gi\|119492632\|ref\|XP_001263660.1\| proteasome regulatory particle subunit Rpt1, putative [Neosartorya ... gi\|66852468, gi\|... - gi\|71000273\|ref\|XP_754831.1\| proteasome regulatory particle subunit Rpt1 [Aspergillus fumigatus Af29...	318.0	[0..1]	[436..1]
PRS7_ORYSA - 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1... gi\|241934501, gi... - gi\|242066762\|ref\|XP_002454670.1\| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor], gi\|241... gi\|226499298, gi... - gi\|226499298\|ref\|NP_001140694.1\| hypothetical protein LOC100272769 [Zea mays], gi\|226497700\|ref\|NP_0... PRS7A_ORYSJ, PRS... - 26S protease regulatory subunit 7B OS=Oryza sativa subsp. japonica GN=RPT1B PE=2 SV=1, 26S protease ... gi\|125541384, gi... - gi\|125554381\|gb\|EAY99986.1\| hypothetical protein OsI_21990 [Oryza sativa Indica Group], gi\|125541384...	317.0	[0..15]	[436..6]
PRS7_SPIOL - 26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1	317.0	[0..15]	[436..6]

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Predicted Domain #1

Region A:
Residues: [1-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKEDWEKY QKPVDTEEEN DKNPPPLDEG DIELLKSYAT GPYARELAAI KEDTEAVLKR  60
   61 INDTVGIKES DTGLAPISFW DVAADRQRMS EEQPLQVARC TKIIENEQSA EKNAYVINLK 120
  121 QIAKFVVSLG ERVSPTDIEE GMRVGCDRNK YAIQLPLPPK IDPSVTMMQV EEKPDVTYGD 180
  181 VGGCKEQIER LREVVELPLL SPERFVKLGI DPPKGIMLYG PPGTGKTLCA RAVANRTDAT 240
  241 FIRVIGSELV QKYVGEGARM VRELFEMART KKACIIFFDE IDAIGGARFD DGAGGDNEVQ 300
  301 RTMLELITQL DGFDPRGNIK VLFATNRPNT LDEALMRPGR IDRKVEFGLP DLEGRAHILR 360
  361 IHAKSMAIDK DIRWELIARL CPSQTGAELR SVCTEAGMFA IRARRRVATE KDFLDAVQKV 420
  421 VKGNQKFSST ADYMNMSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits