YRC Public Data Repository - Protein Structure Prediction

Protein:	rpt3
Organism:	Schizosaccharomyces pombe
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpt3.

Description	E-value	Query Range	Subject Range
gi\|73981961 - gi\|73981961\|ref\|XP_533103.2\| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit, ATPa...	317.0	[0..11]	[382..516]
gi\|71028046 - gi\|71028046\|ref\|XP_763666.1\| 26S proteasome aaa-ATPase subunit Rpt3 [Theileria parva strain Muguga] gi\|68350620 - gi\|68350620\|gb\|EAN31383.1\| 26S proteasome aaa-ATPase subunit Rpt3, putative [Theileria parva]	314.0	[0..4]	[383..12]
gi\|65303722 - gi\|65303722\|emb\|CAI76099.1\| 26s protease regulatory subunit, putative [Theileria annulata] gi\|84996007 - gi\|84996007\|ref\|XP_952725.1\| 26s protease regulatory subunit [Theileria annulata strain Ankara]	313.0	[0..6]	[383..14]
gi\|37994750, gi\|... - gi\|37994750\|gb\|AAH60362.1\| Psmc4 protein [Xenopus laevis], gi\|148229003\|ref\|NP_001083300.1\| proteaso...	310.0	[0..4]	[389..37]
gi\|263099 - gi\|263099\|gb\|AAB24841.1\| Tat binding protein 7, TBP-7=transcriptional activator [human, Peptide, 458...	310.0	[0..4]	[371..35]
gi\|37528354, gi\|... - gi\|37528354\|ref\|NP_931699.1\| ATP-dependent metalloprotease [Photorhabdus luminescens subsp. laumondi...	310.0	[0..24]	[389..43]
gi\|66852117, gi\|... - gi\|70999522\|ref\|XP_754480.1\| proteasome regulatory particle subunit Rpt3 [Aspergillus fumigatus Af29...	310.0	[0..8]	[384..39]
gi\|90337060, gi\|... - gi\|90418980\|ref\|ZP_01226891.1\| ATP-dependent metalloprotease involved in cell division [Aurantimonas... gi\|90337060, gi\|... - gi\|90418980\|ref\|ZP_01226891.1\| ATP-dependent metalloprotease involved in cell division [Aurantimonas...	309.0	[0..24]	[389..45]
gi\|86283151, gi\|... - gi\|86359049\|ref\|YP_470941.1\| cell division metalloproteinase protein [Rhizobium etli CFN 42], gi\|862...	308.0	[0..55]	[389..77]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTEEIDLY NRWKALERQL EMLDLQEGFI KEDCKSLKRE LIRAQEEVKR IQSVPLVIGQ  60
   61 FLEAIDQNTA IVGSTTGSNY VVRILSTLDR ELLKPSASVA LQRHSNALVD ILPPEADSSI 120
  121 SMLRPDERPD VSYADVGGLD VQKQEVREAV ELPLTQGDLY RQIGIDPPRG VLLYGPPGTG 180
  181 KTMLVKAVAN STAANFIRVV GSEFVQKYLG EGPRMVRDVF RMARENAPAI IFIDEIDAIA 240
  241 TKRFDAQTGA DREVQRILIE LLTQMDGFDQ GANVKVIMAT NRADTLDPAL LRPGRLDRKI 300
  301 EFPSYRDRRQ RRLVFQTITA KMLLSPEVDL DTFIMRPDAS SGAQIAAIMQ DAGLLAVRKS 360
  361 RGVILQSDIE EAYARAVKPT DMEQFAFYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits