YRC Public Data Repository - Protein Structure Prediction

Protein:	rpt2
Organism:	Schizosaccharomyces pombe
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpt2.

Description	E-value	Query Range	Subject Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	331.0	[0..3]	[448..274]
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	330.0	[0..3]	[429..300]
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	328.0	[0..3]	[425..300]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	326.0	[0..3]	[436..275]
gi\|116000599 - gi\|116000599\|emb\|CAL50279.1\| putative transitional endoplasmic reticulum ATPase (ISS) [Ostreococcus ...	326.0	[0..3]	[442..336]
gi\|7435751 - pir\|\|A69086 cell division control protein Cdc48 - Methanobacterium thermoautotrophicum (strain Delta... gi\|15679634, gi\|... - gi\|2622767\|gb\|AAB86112.1\| cell division control protein Cdc48 [Methanothermobacter thermautotrophicu...	326.0	[0..5]	[436..299]
CDC48_CAPAN - Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1	326.0	[0..3]	[443..300]
gi\|98962497 - gi\|98962497\|gb\|ABF59516.1\| putative spindle disassembly related protein CDC48 [Nicotiana tabacum]	325.0	[0..3]	[443..300]

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Predicted Domain #1

Region A:
Residues: [1-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQAQSGNFS NFGDGANGDN KKDQKKDKPK YEPPVPTRTG RRKKKAQSGP DASAKLPTVI  60
   61 PTTRCRLRLL KMQRIHDHLL MEEEYVQNQE RLKPQDERTQ EERNRVDEIR GTPMSVGTLE 120
  121 EIIDDDHAIV STAGPEYYVS IMSFVDKDML EPGCSVLLHH KAMSIVGLLL DDTDPMINVM 180
  181 KLDKAPTESY ADIGGLESQI QEIKEAVELP LTHPELYEEM GIKPPKGVIL YGAPGTGKTL 240
  241 LAKAVANQTS ATFLRVVGSE LIQKYLGDGP RLVRQLFNAA EEHSPSIVFI DEIDAIGTKR 300
  301 YDAQSGAERE IQRTMLELLN QLDGFDTSQR DIKVIMATNR ISDLDPALIR PGRIDRKILF 360
  361 ENPDEATKRK IFTIHTSKMN LGEDVNLEEL IQCKDDLSGA EIKAIVSEAG LLALRERRMR 420
  421 VVMDDFRQAR EKVLKTKDEG GPAGGLYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits