YRC Public Data Repository - Protein Structure Prediction

Protein:	spp1
Organism:	Schizosaccharomyces pombe
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spp1.

Description	E-value	Query Range	Subject Range
gi\|40744428, gi\|... - gi\|67525151\|ref\|XP_660637.1\| hypothetical protein AN3033.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	559.0	[0..18]	[452..70]
gi\|83766144 - gi\|83766144\|dbj\|BAE56287.1\| unnamed protein product [Aspergillus oryzae] gi\|169767636 - gi\|169767636\|ref\|XP_001818289.1\| hypothetical protein [Aspergillus oryzae RIB40]	539.0	[0..12]	[452..69]
gi\|70999998, gi\|... - gi\|70999998\|ref\|XP_754716.1\| DNA primase subunit Pri1 [Aspergillus fumigatus Af293], gi\|66852353\|gb\|... gi\|159127725 - gi\|159127725\|gb\|EDP52840.1\| DNA primase subunit Pri1, putative [Aspergillus fumigatus A1163]	535.0	[0..3]	[451..48]
gi\|115384780, gi... - gi\|115384780\|ref\|XP_001208937.1\| DNA primase small subunit [Aspergillus terreus NIH2624], gi\|1141966...	534.0	[0..28]	[452..83]
gi\|46123923, gi\|... - gi\|46123923\|ref\|XP_386515.1\| hypothetical protein FG06339.1 [Gibberella zeae PH-1], gi\|42552113\|gb\|E...	532.0	[0..4]	[453..52]
gi\|85093187 - gi\|85093187\|ref\|XP_959645.1\| DNA primase small subunit [Neurospora crassa OR74A] gi\|28921091, gi\|... - gi\|32421129\|ref\|XP_331008.1\| hypothetical protein [Neurospora crassa], gi\|28921091\|gb\|EAA30409.1\| DN...	528.0	[0..3]	[448..102]
gi\|62898343 - gi\|62898343\|dbj\|BAD97111.1\| DNA primase small subunit, 49kDa variant [Homo sapiens]	522.0	[0..24]	[453..2]
PRI1_MOUSE - DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1	522.0	[0..26]	[453..4]
gi\|60102672 - gi\|60102672\|gb\|AAX14023.1\| DNA primase [Monascus pilosus]	522.0	[0..18]	[452..80]

Back

Predicted Domain #1

Region A:
Residues: [1-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQIDELDD KDLDEIIANG TLDGAKQGAV DSETMIQYYR HLFPWKYLFQ WLNHGPVVTN  60
   61 DFAHREFAFT LPNDAYIRYL SFSNWEELKK EALNLCPSRF EVGPVYSANP RDRKTIRKST 120
  121 FHPLKKELVF DIDMTDYDDV RTCCSKTNIC EKCWPFITIA VQVLDICFHE DFGFKHILWV 180
  181 YSGRRGIHAW ICDEIACSLD DRSRRMIASY LQVVVGNPQG GVRLINNLKR PLHPHLTRSL 240
  241 NILKSAFVKI VLEDQDPWAS KEGAENLLKL LPDKDLASAL RKKWEVDPER SSKNKWSDID 300
  301 TVLASGSIAS ISPSVIAIAK QDIVLTYLYP RLDVEVSRHL NHLLKSPFCV HPGTSRVCVP 360
  361 IDIERMDSFN PLKVPTVNDL LQELDKNSQN DNGHGPTMET NTTENQKDNA RGQSNKGHGF 420
  421 STSLNPYTLY FKSFSSQLFK ETVGNKRKHE NLEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.0
Match:	1v33A
Description:	Crystal structure of DNA primase from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits