YRC Public Data Repository - Protein Structure Prediction

Protein:	pof5
Organism:	Schizosaccharomyces pombe
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof5.

Description	E-value	Query Range	Subject Range
gi\|190404752 - gi\|190404752\|gb\|EDV08019.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YD306_YEAST - F-box protein YDR306C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR306C PE=1 SV=1 YDR306C - F-box protein of unknown function; interacts with Sgt1p via a Leucine-Rich Repeat (LRR) domain gi\|151942278 - gi\|151942278\|gb\|EDN60634.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207346476 - gi\|207346476\|gb\|EDZ72960.1\| YDR306Cp-like protein [Saccharomyces cerevisiae AWRI1631]	174.0	[0..2]	[345..113]
orf19.432, orf19... - orf19.432 CGDID:CAL0005652 Assembly 19, Contig19-10052 (49790, 51166) CDS, translated using codon ta... gi\|46437510, gi\|... - gi\|68480329\|ref\|XP_715867.1\| hypothetical protein CaO19.432 [Candida albicans SC5314], gi\|68480214\|r...	173.0	[0..1]	[345..111]
gi\|44980118 - gi\|44980118\|gb\|AAS50314.1\| AAL052Cp [Ashbya gossypii ATCC 10895] gi\|45184772, gi\|... - gi\|45184772\|ref\|NP_982490.1\| AAL052Cp [Ashbya gossypii ATCC 10895], gi\|44980118\|gb\|AAS50314.1\| AAL05...	170.0	[0..2]	[345..85]
gi\|49641783, gi\|... - gi\|50305381\|ref\|XP_452650.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641783\|emb\|CAH0150... gi\|49641783 - gi\|49641783\|emb\|CAH01501.1\| KLLA0C10120p [Kluyveromyces lactis]	151.0	[0..2]	[346..78]
gi\|50288231, gi\|... - gi\|50288231\|ref\|XP_446544.1\| unnamed protein product [Candida glabrata], gi\|49525852\|emb\|CAG59471.1\|... gi\|49525852 - gi\|49525852\|emb\|CAG59471.1\| unnamed protein product [Candida glabrata]	144.0	[0..2]	[346..143]
gi\|50422187, gi\|... - gi\|50422187\|ref\|XP_459656.1\| hypothetical protein DEHA0E08481g [Debaryomyces hansenii CBS767], gi\|49...	144.0	[0..1]	[345..14]
gi\|109474124 - gi\|109474124\|ref\|XP_001057666.1\| PREDICTED: similar to F-box/LRR-repeat protein 14 (F-box and leucin...	140.0	[0..1]	[325..173]
gi\|50734604 - gi\|50734604\|ref\|XP_426048.1\| PREDICTED: similar to mKIAA0840 protein [Gallus gallus]	131.0	[0..3]	[306..152]
gi\|20521674 - gi\|20521674\|dbj\|BAA74863.2\| KIAA0840 protein [Homo sapiens]	130.0	[0..1]	[306..146]
gi\|37360118 - gi\|37360118\|dbj\|BAC98037.1\| mKIAA0840 protein [Mus musculus]	128.0	[0..1]	[306..146]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSFPPEIWH HIFDHLISFD KFEAKNFGGL LRICRSSYVG GLHAIYYFPK LNPRNYHKFV  60
   61 DTISRKPTRK LVHHISLNNV SYASKASITS RLLRRCATNL ETFSGPQSGL GFTALRAFSQ 120
  121 CQKLKKIDLS ILSEKIDLQY LFGGIQHLKH LEYIILPYLS IPAPMCTECW PSSLTFVGFS 180
  181 GGLTDDFLAE SVFPPSLKSI NITQCPLLTD AGIFSLLSKI GPNLSSVCVQ YPMPELSRSG 240
  241 LDCIFQLCPN ATTISIPANY ITSTAFESIP ESGHNVRSLE ITYSGSLLTN ISLIKADDLV 300
  301 GALVDGKLPN LHRLQWSIRL GWREESQDVQ DLLELIDDQD GEVFITVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	1fqvA
Description:	Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits