YRC Public Data Repository - Protein Structure Prediction

Protein:	pof4
Organism:	Schizosaccharomyces pombe
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof4.

Description	E-value	Query Range	Subject Range
gi\|1363329 - gi\|1363329\|pir\|\|A57244 transcription elongation factor elongin A - rat	192.0	[0..1]	[148..547]
gi\|73950625 - gi\|73950625\|ref\|XP_535361.2\| PREDICTED: similar to Transcription elongation factor B polypeptide 3 (...	188.0	[0..1]	[148..622]
ELOA1_MOUSE - Transcription elongation factor B polypeptide 3 OS=Mus musculus GN=Tceb3 PE=1 SV=3	187.0	[0..1]	[148..547]
gi\|47087443, gi\|... - gi\|47087443\|ref\|NP_998620.1\| elongin A [Danio rerio], gi\|27881892\|gb\|AAH44429.1\| Zgc:55573 [Danio re...	184.0	[0..1]	[147..400]
gi\|108999119 - gi\|108999119\|ref\|XP_001103322.1\| PREDICTED: elongin A isoform 1 [Macaca mulatta]	183.0	[0..1]	[148..657]
gi\|114554661 - gi\|114554661\|ref\|XP_513196.2\| PREDICTED: elongin A [Pan troglodytes]	182.0	[0..1]	[148..529]
gi\|27462076 - gi\|27462076\|gb\|AAO15305.1\|AF116729_1 MSTP059 [Homo sapiens]	182.0	[0..1]	[148..441]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSLKDLCIQ VAQKHVHDID DIGDCPFELV KPILEKARPE HLIDLEEKSP HLKVDTQPLW  60
   61 KDHVLRDFGL ELQKRTILNN IDDWRGLYGK LKKKRNAHYN VASAKLRSAY TKLEQSKQNK 120
  121 RIVPLEREPR AARPPKRPRP MSNYCPKSSL MARAKSDFLK KALLPVILFQ LLHPLGAFPN 180
  181 CIPLDVLLLT LLILLQSVL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.69897
Match:	PF06881.2
Description:	No description for PF06881.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits