YRC Public Data Repository - Protein Structure Prediction

Protein:	gpm1
Organism:	Schizosaccharomyces pombe
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpm1.

Description	E-value	Query Range	Subject Range
gi\|194416724, gi... - gi\|83568957\|ref\|ZP_00920422.1\| COG0588: Phosphoglycerate mutase 1 [Shigella dysenteriae 1012], gi\|19...	220.0	[0..5]	[211..1]
gi\|110647741, gi... - gi\|110834630\|ref\|YP_693489.1\| phosphoglycerate mutase [Alcanivorax borkumensis SK2], gi\|110647741\|em...	219.0	[0..6]	[211..1]
gi\|23508399, gi\|... - gi\|23508399\|ref\|NP_701068.1\| phosphoglycerate mutase, putative [Plasmodium falciparum 3D7], gi\|23496...	219.0	[0..5]	[211..1]
gi\|214001890 - gi\|214001890\|ref\|ZP_03412625.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALPC - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi C (strain RKS4594)... gi\|213427699 - gi\|213427699\|ref\|ZP_03360449.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV... gi\|213582686 - gi\|213582686\|ref\|ZP_03364512.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213649737 - gi\|213649737\|ref\|ZP_03379790.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213854586 - gi\|213854586\|ref\|ZP_03382826.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|199602212, gi... - gi\|200389767\|ref\|ZP_03216378.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALTI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3 gi\|204320976, gi... - gi\|204929982\|ref\|ZP_03221003.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213163241 - gi\|213163241\|ref\|ZP_03348951.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213420657 - gi\|213420657\|ref\|ZP_03353723.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|16759697 - gi\|16759697\|ref\|NP_455314.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typhi... GPMA_SALNS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella newport (strain SL254) GN=gp... gi\|194456919, gi... - gi\|194470555\|ref\|ZP_03076539.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALTI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3 GPMA_SALSV - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella schwarzengrund (strain CVM19... gi\|29138161, gi\|... - gi\|29142530\|ref\|NP_805872.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typhi... gi\|197264300, gi... - gi\|197264300\|ref\|ZP_03164374.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV... gi\|205334784, gi... - gi\|205334784\|gb\|EDZ21548.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... gi\|168236694, gi... - gi\|197290171\|gb\|EDY29528.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis (strain SC-B67)...	219.0	[0..5]	[211..1]
gi\|58177556, gi\|... - gi\|58177557\|pdb\|1XQ9\|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium Falciparum At 2...	219.0	[0..5]	[211..9]
gi\|91209783, gi\|... - gi\|91209783\|ref\|YP_539769.1\| phosphoglycerate mutase 1 [Escherichia coli UTI89], gi\|91071357\|gb\|ABE0... gi\|237707289, gi... - gi\|237707289\|ref\|ZP_04537770.1\| phosphoglyceromutase [Escherichia sp. 3_2_53FAA], gi\|226898499\|gb\|EE... gi\|26107120, gi\|... - gi\|26246721\|ref\|NP_752761.1\| phosphoglyceromutase [Escherichia coli CFT073], gi\|26107120\|gb\|AAN79304...	219.0	[0..5]	[211..6]
GPMA_ECO57 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O157:H7 GN=gpmA PE=3 S... gi\|254591305, gi... - gi\|254791905\|ref\|YP_003076742.1\| phosphoglyceromutase 1 [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|30040333, gi\|... - gi\|30062089\|ref\|NP_836260.1\| phosphoglyceromutase [Shigella flexneri 2a str. 2457T], gi\|30040333\|gb\|... gi\|253972719, gi... - gi\|254160818\|ref\|YP_003043926.1\| phosphoglyceromutase [Escherichia coli B str. REL606], gi\|253972719... GPMA_ECOL6 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O6:H1 (strain CFT073 /... gi\|12513684, gi\|... - gi\|15800464\|ref\|NP_286476.1\| phosphoglyceromutase [Escherichia coli O157:H7 EDL933], gi\|12513684\|gb\|... gi\|253774281, gi... - gi\|254287606\|ref\|YP_003053354.1\| phosphoglyceromutase [Escherichia coli BL21(DE3)], gi\|253976913\|gb\|... EG11699 - phosphoglyceromutase 1 / Phosphoglycerate mutase, 2,3-bisphosphoglycerate-dependent; dPGM; Fur regul... gi\|251784237, gi... - gi\|251784237\|ref\|YP_002998541.1\| hypothetical protein B21_00697 [Escherichia coli BL21], gi\|24237651... GPMA_ECOBW - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain K12 / MC4100 /... gi\|227839037, gi... - gi\|227884285\|ref\|ZP_04002090.1\| phosphoglyceromutase [Escherichia coli 83972], gi\|227839037\|gb\|EEJ49... GPMA_ECOL6 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmA PE=3 SV=2 GPMA_ECOLI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)... GPMA_SHIFL - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella flexneri GN=gpmA PE=3 SV=2 GPMA_SHIBS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb22... gi\|56383240, gi\|... - gi\|56479689\|ref\|NP_706486.2\| phosphoglyceromutase [Shigella flexneri 2a str. 301], gi\|56383240\|gb\|AA... gi\|188487599, gi... - gi\|75511357\|ref\|ZP_00734042.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli 53638], gi\|18849... GPMA_SHISS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmA ... GPMA_ECOLC - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DS... GPMA_SHIB3 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella boydii serotype 18 (strain CDC... GPMA_ECOHS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O9:H4 (strain HS) GN=g... gi\|83584860, gi\|... - gi\|83584860\|ref\|ZP_00923519.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli 101-1], gi\|19443... gi\|75237091, gi\|... - gi\|75237091\|ref\|ZP_00721145.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli F11], gi\|1911741... gi\|192926788, gi... - gi\|75256339\|ref\|ZP_00728009.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli E22], gi\|1930656... gi\|75228378, gi\|... - gi\|75228378\|ref\|ZP_00715026.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli B7A], gi\|1911684... gi\|192957134, gi... - gi\|75235772\|ref\|ZP_00719927.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli E110019], gi\|193... gi\|89107606, gi\|... - gi\|89107606\|ref\|AP_001386.1\| phosphoglyceromutase 1 [Escherichia coli str. K-12 substr. W3110], gi\|4... gi\|13360242, gi\|... - gi\|15830037\|ref\|NP_308810.1\| phosphoglyceromutase [Escherichia coli O157:H7 str. Sakai], gi\|13360242... GPMA_ECOL5 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536... GPMA_SHIF8 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella flexneri serotype 5b (strain 8... gi\|168763345, gi... - gi\|189366417\|gb\|EDU84833.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... gi\|189363482, gi... - gi\|189363482\|gb\|EDU81901.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... gi\|168776500, gi... - gi\|187768149\|gb\|EDU31993.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... gi\|189002856, gi... - gi\|189002856\|gb\|EDU71842.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... gi\|189373126, gi... - gi\|189373126\|gb\|EDU91542.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... gi\|168800813, gi... - gi\|189376939\|gb\|EDU95355.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... GPMA_ECODH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain K12 / DH10B) G... GPMA_ECOSM - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain SMS-3-5 / SECE... gi\|168750247, gi... - gi\|188015491\|gb\|EDU53613.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... gi\|189355841, gi... - gi\|189355841\|gb\|EDU74260.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c... GPMA_ESCF3 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia fergusonii (strain ATCC 354... GPMA_ECO8A - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O8 (strain IAI1) GN=gp... GPMA_ECO45 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O45:K1 (strain S88 / E... GPMA_ECO81 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O81 (strain ED1a) GN=g... GPMA_ECO55 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain 55989 / EAEC) ... GPMA_ECO7I - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O7:K1 (strain IAI39 / ... GPMA_ECOLU - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O17:K52:H18 (strain UM... gi\|170769020, gi... - gi\|170769020\|ref\|ZP_02903473.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich... EG11699 - phosphoglyceromutase 1 / Phosphoglycerate mutase, 2,3-bisphosphoglycerate-dependent; dPGM; Fur regul... gi\|195936743 - gi\|195936743\|ref\|ZP_03082125.1\| phosphoglyceromutase 1 [Escherichia coli O157:H7 str. EC4024] gi\|208732453, gi... - gi\|208815805\|ref\|ZP_03256984.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich... GPMA_ECOK1 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O1:K1 / APEC GN=gpmA P... gi\|208822250, gi... - gi\|208822250\|ref\|ZP_03262569.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich... gi\|124531872, gi... - gi\|124531872\|ref\|ZP_01701971.1\| phosphoglycerate mutase 1 family [Escherichia coli B], gi\|124498293\|... GPMA_ECO5E - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O157:H7 (strain EC4115... sp\|B7ULM8\|GPMA_ECO27 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O127:H6 (strain E2348/... GPMA_ECOSE - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain SE11) GN=gpmA ... GPMA_ECO27 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O127:H6 (strain E2348/... gi\|217325929, gi... - gi\|217325929\|ref\|ZP_03442013.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich...	219.0	[0..5]	[211..1]
gi\|75209076, gi\|... - gi\|75209076\|ref\|ZP_00709334.1\| COG0588: Phosphoglycerate mutase 1 [Escherichia coli B171], gi\|194429...	219.0	[0..5]	[211..1]
GPMA_SALA4 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella agona (strain SL483) GN=gpmA... GPMA_SALPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA... GPMA_SALHS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella heidelberg (strain SL476) GN... GPMA_SALEP - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella enteritidis PT4 (strain P125... GPMA_SALG2 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella gallinarum (strain 287/91 / ... gi\|167994417, gi... - gi\|205327722\|gb\|EDZ14486.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... gi\|205324579, gi... - gi\|205324579\|gb\|EDZ12418.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=... gi\|168263737, gi... - gi\|205347720\|gb\|EDZ34351.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... gi\|205340128, gi... - gi\|205340128\|gb\|EDZ26892.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... lcl\|NC_016856.1_... - [gene=gpmA] [protein=phosphoglyceromutase] [protein_id=YP_005236490.1] [location=complement(836703..... GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium (strain LT2 / SG... GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=... GPMA_SALPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA...	218.0	[0..5]	[211..1]
gi\|56519729 - gi\|56519729\|emb\|CAH78524.1\| phosphoglycerate mutase, putative [Plasmodium chabaudi chabaudi] gi\|70942433 - gi\|70942433\|ref\|XP_741383.1\| phosphoglycerate mutase [Plasmodium chabaudi chabaudi]	218.0	[0..5]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEAAPNLL VLTRHGESEW NKLNLFTGWK DPALSETGIK EAKLGGERLK SRGYKFDIAF  60
   61 TSALQRAQKT CQIILEEVGE PNLETIKSEK LNERYYGDLQ GLNKDDARKK WGAEQVQIWR 120
  121 RSYDIAPPNG ESLKDTAERV LPYYKSTIVP HILKGEKVLI AAHGNSLRAL IMDLEGLTGD 180
  181 QIVKRELATG VPIVYHLDKD GKYVSKELID N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1fztA
Description:	Phosphoglycerate mutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoglycerate mutase activity	3.38777226675734	bayes_pls_golite062009
phosphofructokinase activity	3.23286891159765	bayes_pls_golite062009
fructose-2,6-bisphosphate 2-phosphatase activity	2.79017097989614	bayes_pls_golite062009
6-phosphofructo-2-kinase activity	2.66778782568695	bayes_pls_golite062009
acid phosphatase activity	2.30852687504184	bayes_pls_golite062009
hydrolase activity	2.03142958239384	bayes_pls_golite062009
carbohydrate kinase activity	1.86382423322759	bayes_pls_golite062009
carbohydrate phosphatase activity	1.56016941506609	bayes_pls_golite062009
binding	1.50412762608586	bayes_pls_golite062009
catalytic activity	1.37714494241232	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.05740895199147	bayes_pls_golite062009
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity	1.02570448989802	bayes_pls_golite062009
phosphatase activity	0.977262057801137	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	0.916759493094631	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.780670874345357	bayes_pls_golite062009
isomerase activity	0.275500708652009	bayes_pls_golite062009
protein binding	0.236742803345453	bayes_pls_golite062009
intramolecular transferase activity	0.17180601190736	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.116796724149401	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: