YRC Public Data Repository - Protein Structure Prediction

Protein:	pma1
Organism:	Schizosaccharomyces pombe
Length:	919 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pma1.

Description	E-value	Query Range	Subject Range
gi\|114558784 - gi\|114558784\|ref\|XP_513679.2\| PREDICTED: hypothetical protein [Pan troglodytes]	653.0	[0..16]	[889..128]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1	653.0	[0..13]	[889..3]
gi\|225173 - gi\|225173\|prf\|\|1210234A ATPase alpha,Na/K	648.0	[0..13]	[889..3]
gi\|11067034 - gi\|11067034\|gb\|AAG27060.1\| Na+/K+ ATPase alpha subunit isoform 8 [Danio rerio]	646.0	[0..14]	[882..4]
gi\|164382 - gi\|164382\|gb\|AAA31002.1\| Na+, K+-ATPase alpha-subunit precursor [Sus scrofa]	646.0	[0..13]	[889..3]
AT1A1_BOVIN - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bos taurus GN=ATP1A1 PE=1 SV=1	645.0	[0..13]	[889..3]
AT1A1_RHIMB - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Rhinella marina GN=ATP1A1 PE=1 SV=2	644.0	[0..14]	[889..4]
AT1A1_SHEEP - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries GN=ATP1A1 PE=1 SV=1	644.0	[0..13]	[889..3]
AT1A1_RABIT - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oryctolagus cuniculus GN=ATP1A1 PE=1 SV=2	643.0	[0..13]	[889..3]

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Predicted Domain #1

Region A:
Residues: [1-919]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNAGEYHD AEKHAPEQQA PPPQQPAHAA APAQDDEPDD DIDALIEELF SEDVQEEQED  60
   61 NDDAPAAGEA KAVPEELLQT DMNTGLTMSE VEERRKKYGL NQMKEELENP FLKFIMFFVG 120
  121 PIQFVMEMAA ALAAGLRDWV DFGVICALLM LNAVVGFVQE YQAGSIVDEL KKSLALKAVV 180
  181 IREGQVHELE ANEVVPGDIL KLDEGTIICA DGRVVTPDVH LQVDQSAITG ESLAVDKHYG 240
  241 DPTFASSGVK RGEGLMVVTA TGDSTFVGRA ASLVNAAAGG TGHFTEVLNG IGTILLVLVL 300
  301 LTLFCIYTAA FYRSVRLARL LEYTLAITII GVPVGLPAVV TTTMAVGAAY LAEKQAIVQK 360
  361 LSAIESLAGV EVLCSDKTGT LTKNKLSLGE PFTVSGVSGD DLVLTACLAA SRKRKGLDAI 420
  421 DKAFLKALKN YPGPRSMLTK YKVIEFQPFD PVSKKVTAYV QAPDGTRITC VKGAPLWVLK 480
  481 TVEEDHPIPE DVLSAYKDKV GDLASRGYRS LGVARKIEGQ HWEIMGIMPC SDPPRHDTAR 540
  541 TISEAKRLGL RVKMLTGDAV DIAKETARQL GMGTNIYNAE RLGLTGGGNM PGSEVYDFVE 600
  601 AADGFGEVFP QHKYAVVDIL QQRGYLVAMT GDGVNDAPSL KKADTGIAVE GATDAARSAA 660
  661 DIVFLAPGLS AIIDALKTSR QIFHRMYSYV VYRIALSLHL EIFLGLWLII RNQLLNLELV 720
  721 VFIAIFADVA TLAIAYDNAP YSMKPVKWNL PRLWGLSTVI GIVLAIGTWI TNTTMIAQGQ 780
  781 NRGIVQNFGV QDEVLFLEIS LTENWLIFVT RCNGPFWSSI PSWQLSGAVL AVDILATMFC 840
  841 IFGWFKGGHQ TSIVAVLRIW MYSFGIFCIM AGTYYILSES AGFDRMMNGK PKESRNQRSI 900
  901 EDLVVALQRT STRHEKGDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1mhsA
Description:	Proton ATPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits