YRC Public Data Repository - Protein Structure Prediction

Protein:	pin1
Organism:	Schizosaccharomyces pombe
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pin1.

Description	E-value	Query Range	Subject Range
gi\|42555474, gi\|... - gi\|46124309\|ref\|XP_386708.1\| hypothetical protein FG06532.1 [Gibberella zeae PH-1], gi\|42555474\|gb\|E...	166.0	[0..1]	[173..1]
gi\|47218949 - gi\|47218949\|emb\|CAF98147.1\| unnamed protein product [Tetraodon nigroviridis]	163.0	[0..1]	[175..1]
gi\|41152183, gi\|... - gi\|41152183\|ref\|NP_957042.1\| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1 [Danio...	163.0	[0..1]	[174..1]
gi\|49097644, gi\|... - gi\|67539950\|ref\|XP_663749.1\| hypothetical protein AN6145.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	163.0	[0..3]	[173..8]
gi\|66563115 - gi\|66563115\|ref\|XP_624205.1\| PREDICTED: similar to Protein dodo [Apis mellifera]	162.0	[0..1]	[175..1]
gi\|39972175, gi\|... - gi\|39972175\|ref\|XP_367478.1\| hypothetical protein MG07389.4 [Magnaporthe grisea 70-15], gb\|EAA53112....	161.0	[0..1]	[173..1]
gi\|68491571, gi\|... - gi\|68491594\|ref\|XP_710404.1\| hypothetical protein CaO19.5196 [Candida albicans SC5314], gi\|68491571\|... gi\|238879094 - gi\|238879094\|gb\|EEQ42732.1\| peptidyl-prolyl cis-trans isomerase 1 [Candida albicans WO-1] gi\|12655856, gi\|... - gi\|66361212\|pdb\|1YW5\|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans, gi\|12655856\|gb...	161.0	[0..3]	[174..5]
gi\|2739197 - gi\|2739197\|gb\|AAC49984.1\| peptidyl-prolyl cis/trans isomerase [Emericella nidulans]	160.0	[0..1]	[173..1]
gi\|119604464 - gi\|119604464\|gb\|EAW84058.1\| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1, isoform... gi\|114675259 - gi\|114675259\|ref\|XP_001161914.1\| PREDICTED: similar to Chain B, Structural Basis For The Phosphoseri...	160.0	[0..1]	[174..1]
gi\|169783918 - gi\|169783918\|ref\|XP_001826421.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775165 - gi\|83775165\|dbj\|BAE65288.1\| unnamed protein product [Aspergillus oryzae]	160.0	[0..1]	[173..86]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTGLPKPW IVKISRSRNR PYFFNTETHE SLWEPPAATD MAALKKFIAN ELQESVTPTE  60
   61 ASNSPKIRAS HLLVKHRESR RPSSWKEEHI TRSKEEARKL AEHYEQLLKS GSVSMHDLAM 120
  121 KESDCSSARR GGELGEFGRD EMQKPFEDAA FALKPGEISG VVETSSGFHI IQRHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1yw5A
Description:	Peptidyl-prolyl isomerase ESS1 from Candida albicans
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits