YRC Public Data Repository - Protein Structure Prediction

Protein:	gpi17
Organism:	Schizosaccharomyces pombe
Length:	554 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpi17.

Description	E-value	Query Range	Subject Range
gi\|22330899, gi\|... - gi\|22330899\|ref\|NP_187374.2\| GPI transamidase component PIG-S-related [Arabidopsis thaliana], gi\|221...	549.0	[0..73]	[542..35]
gi\|171680763 - gi\|171680763\|ref\|XP_001905326.1\| unnamed protein product [Podospora anserina] gi\|170940009, gi... - gi\|27764276\|emb\|CAD60556.1\| unnamed protein product [Podospora anserina], gi\|170940009\|emb\|CAP65235....	541.0	[0..52]	[535..19]
gi\|32410815, gi\|... - gi\|32410815\|ref\|XP_325888.1\| hypothetical protein [Neurospora crassa], gi\|28921068\|gb\|EAA30387.1\| co... gi\|85093080 - gi\|85093080\|ref\|XP_959623.1\| hypothetical protein NCU06033 [Neurospora crassa OR74A]	536.0	[0..52]	[543..35]
gi\|38111769, gi\|... - gi\|39946504\|ref\|XP_362789.1\| hypothetical protein MGG_08259 [Magnaporthe grisea 70-15], gb\|EAA57290....	533.0	[0..36]	[548..6]
gi\|109113740 - gi\|109113740\|ref\|XP_001107517.1\| PREDICTED: similar to phosphatidylinositol glycan class S isoform 3...	522.0	[0..64]	[543..1]
gi\|114668500 - gi\|114668500\|ref\|XP_001145534.1\| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class S...	522.0	[0..64]	[543..1]
gi\|37183341, gi\|... - gi\|37183341\|gb\|AAQ89470.1\| PIGS [Homo sapiens], gi\|119571484\|gb\|EAW51099.1\| phosphatidylinositol gly...	521.0	[0..64]	[543..1]
PIGS_RAT - GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3	520.0	[0..67]	[543..12]
gi\|116200700, gi... - gi\|88175609\|gb\|EAQ83077.1\| hypothetical protein CHGG_10895 [Chaetomium globosum CBS 148.51], gi\|1162...	520.0	[0..70]	[552..51]

Back

Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPCKWLTMF LKGCWGKIAN MNHLDSCFPL RYIIGRKKAS KLLCTMDSGL KSDSHEVERS  60
   61 NFQLNKPEKS LKRYALLSFY VIILLAIPVW WKTTHYERSS LPFEDMENAP STVQTHLRFS 120
  121 PTFRILDDKG NNLTKEVQKV LEAEPQIYSY NLKVLEDDPV DYRIVLREST DLQWFWDENN 180
  181 FIIDTPSKGP SELAI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [196-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIVNCLWEAF SPQVMEVWSK FTRFSSTVEP SRAETKRTVQ FSPQYRVLLS LLVGEGNHEP  60
   61 INWDIENAIQ KYFNPLIEQL ASLAKLNIET QIQYFVEDAE AYIKDDKFCT KHADLPNLVN 120
  121 NFEKYLSFSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.842	d.323.1	Description not found.

Predicted Domain #3

Region A:
Residues: [326-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIREPTIHFV LYVPSPQIQP LWLENEDSNI IPTNSMLLPQ WGSITTINFN VTEKKLLHDV  60
   61 DLKDYFRVIS RDLLLLLGIN DVPVSSLSAT LADRLLRQRI AESCIEASDT LQNLAKLVHS 120
  121 MQSMAVPKEI QMYVKDTLLS LDMAYKALSQ NNLNEALSYS NNAFSKSQEA LFHPSMVTTI 180
  181 YFPDESKYGI YAPLFAPILI PLLISFIKEV KDMLRERKLH RVANVPKPN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits