YRC Public Data Repository - Protein Structure Prediction

Protein:	gpi12
Organism:	Schizosaccharomyces pombe
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpi12.

Description	E-value	Query Range	Subject Range
gi\|79323249, gi\|... - gi\|79323249\|ref\|NP_001031431.1\| unknown protein [Arabidopsis thaliana], gi\|51971593\|dbj\|BAD44461.1\| ...	233.0	[0..1]	[246..1]
FBpp0310553, CG4... - This gene is referred to in FlyBase by the symbol Dmel\CG4433 (CG4433, FBgn0038763). It is a protein...	208.0	[0..14]	[246..121]
PIGL_RAT - N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Rattus norvegicus GN=Pigl PE=2 SV=1	207.0	[0..6]	[245..4]
gi\|215701450, gi... - gi\|50929667\|ref\|XP_474361.1\| OSJNBb0017I01.2 [Oryza sativa (japonica cultivar-group)], gi\|32487388\|e...	207.0	[0..1]	[246..1]
PIGL_MOUSE - N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Mus musculus GN=Pigl PE=2 SV=1	203.0	[0..9]	[245..7]
gi\|68124462, gi\|... - gi\|68124462\|emb\|CAJ02302.1\| N-acetylglucosaminylphosphatidylinositoldeacety la se [Leishmania major]... gi\|157864918 - gi\|157864918\|ref\|XP_001681167.1\| N-acetylglucosaminylphosphatidylinositoldeacety la se [Leishmania m...	191.0	[0..18]	[244..20]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWFWSTLLV TAIAVLSTAN ESSSGQEKLA VESILFVFAH PDDESMFFGP TIDYLGNQHS  60
   61 TRVHVLCLSN GNADGLGSVR EKELVVAASK YQIDKTNVHV VSDPQLQDGM QAKWDPTDVA 120
  121 KHISQIIERY NIKTLITFDN KGISGHPNHI ACYEGAMKIV KATPQVQVFV LESVNIFRKY 180
  181 ISYLDTIPTL VQSQAGRNDT IIIHADRKST QRIRDAMVRG HKSQMVWFRY GWIYLSKYMS 240
  241 NNVLKRAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2ixdA
Description:	No description for 2ixdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits