YRC Public Data Repository - Protein Structure Prediction

Protein:	omt2
Organism:	Schizosaccharomyces pombe
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for omt2.

Description	E-value	Query Range	Subject Range
CE18240 - WBGene00020397 locus:pcbd-1 status:Partially_confirmed	142.0	[0..1]	[94..84]
gi\|157745959 - gi\|157745959\|ref\|XP_001668076.1\| Hypothetical protein CBG03930 [Caenorhabditis briggsae AF16] gi\|39595301, gi\|... - gi\|39595301\|emb\|CAE60338.1\| Hypothetical protein CBG03930 [Caenorhabditis briggsae], gi\|187036132\|em...	140.0	[0..1]	[95..51]
gi\|73971304 - gi\|73971304\|ref\|XP_852425.1\| PREDICTED: similar to dimerization cofactor of hepatocyte nuclear facto...	136.0	[0..1]	[93..49]
gi\|157132864, gi... - gi\|157132864\|ref\|XP_001662676.1\| hypothetical protein AaeL_AAEL002898 [Aedes aegypti], gi\|108881639\|...	135.0	[0..1]	[93..126]
gi\|109078764 - gi\|109078764\|ref\|XP_001103319.1\| PREDICTED: similar to Pterin-4-alpha-carbinolamine dehydratase 2 (P...	135.0	[0..1]	[93..212]
gi\|94312465, gi\|... - gi\|94312465\|ref\|YP_585675.1\| pterin-4-alpha-carbinolamine dehydratase [Ralstonia metallidurans CH34]...	135.0	[0..4]	[93..31]
gi\|72120483, gi\|... - gi\|73543070\|ref\|YP_297590.1\| pterin-4-alpha-carbinolamine dehydratase [Ralstonia eutropha JMP134], g...	133.0	[0..4]	[93..24]
gi\|47221757 - gi\|47221757\|emb\|CAG08811.1\| unnamed protein product [Tetraodon nigroviridis]	132.0	[0..1]	[93..42]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSARLLAL VSKSKNNWIL QQGDTKLFKS FRFKNFIEAW GFMSCVALRA QQLNHHPEWT  60
   61 NVYNKVDITL TTHDTKGLTE KDLKLAEFID TLAKDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1ru0A
Description:	Crystal structure of DCoH2, a paralog of DCoH, the Dimerization Cofactor of HNF-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits