YRC Public Data Repository - Protein Structure Prediction

Protein:	cpp1
Organism:	Schizosaccharomyces pombe
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpp1.

Description	E-value	Query Range	Subject Range
gi\|34148075 - gi\|34148075\|gb\|AAQ62584.1\| putative Rab geranylgeranyl transferase type II beta subunit [Glycine max...	331.0	[0..28]	[381..3]
gi\|208967224 - gi\|208967224\|dbj\|BAG73626.1\| Rab geranylgeranyltransferase beta subunit [synthetic construct] ENSPTRT00000001654 - null RABGGTB - Rab geranylgeranyltransferase, beta subunit gi\|109008511 - gi\|109008511\|ref\|XP_001101556.1\| PREDICTED: similar to Rab geranylgeranyltransferase, beta subunit [...	326.0	[0..10]	[369..5]
gi\|73960159 - gi\|73960159\|ref\|XP_855504.1\| PREDICTED: similar to Rab geranylgeranyltransferase, beta subunit [Cani...	325.0	[0..10]	[369..160]
gi\|148679950, gi... - gi\|74227618\|dbj\|BAE35665.1\| unnamed protein product [Mus musculus], gi\|254553293\|ref\|NP_001156950.1\|...	324.0	[0..8]	[369..3]
gi\|149026283, gi... - gi\|51261120\|gb\|AAH78683.1\| Rab geranylgeranyltransferase, beta subunit [Rattus norvegicus], gi\|14902...	324.0	[0..8]	[369..3]
PGTB2_BOVIN - Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1	323.0	[0..10]	[369..5]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELSETQVM QNETATAVLP LLNGESQSFN LQKHLKYLTK MLDPLPSPFT VLDASRAWMV  60
   61 YWELSSLAIL GKLDSSVCER AISSVRQLKG PSGGFCGGNG QDEHLLSTYA SILSICLCDS 120
  121 TDAYSLIERD RLYDWLFSLK NPDGSFRVNN EGESDARSVY AAVCVSSLVG ISMDDPLFEG 180
  181 TLQWLCKCQT YEGGLSGVPY AEAHGGYTFC ALAAIALLGG LDNLNEIKLS TWLVQRQDPA 240
  241 LYGFSGRSNK LVDGCYSWWV GASHVIVASG YGSASHKSLP NLFYNPEKLL GYILQCCQST 300
  301 SGGLRDKPPK RPDQYHTCYC LLGLSSIAYD YRYHTSDGWS YKPSILHSSL SSLLPAHPIY 360
  361 CVPFGFEERI KSYFLSQESS KF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.522879
Match:	1jcqB
Description:	Protein farnesyltransferase, beta-subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits