YRC Public Data Repository - Protein Structure Prediction

Protein:	bob1
Organism:	Schizosaccharomyces pombe
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bob1.

Description	E-value	Query Range	Subject Range
gi\|109115395 - gi\|109115395\|ref\|XP_001106116.1\| PREDICTED: similar to type I hair keratin 6 isoform 2 [Macaca mulat...	152.0	[0..7]	[153..174]
gi\|46485080, gi\|... - gi\|62656991\|ref\|XP_579207.1\| PREDICTED: keratin complex 1, acidic, gene 5 (predicted) [Rattus norveg...	151.0	[0..7]	[153..169]
gi\|115497148, gi... - gi\|115497148\|ref\|NP_001069541.1\| keratin 35 [Bos taurus], gi\|112362196\|gb\|AAI19952.1\| Keratin 35 [Bo...	151.0	[0..7]	[153..178]
gi\|55645541 - gi\|55645541\|ref\|XP_523648.1\| PREDICTED: keratin 35 [Pan troglodytes]	150.0	[0..7]	[153..178]
gi\|73965825 - gi\|73965825\|ref\|XP_548107.2\| PREDICTED: similar to type I hair keratin 6 [Canis familiaris]	147.0	[0..7]	[153..174]
gi\|94390824, gi\|... - gi\|94392014\|ref\|XP_987300.1\| PREDICTED: similar to type I hair keratin KA28 [Mus musculus], gi\|94390...	147.0	[0..7]	[153..170]
KRT36 - keratin 36	147.0	[0..7]	[153..174]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGNKAVDL TSLSLEQLSE VIKQLDSELE YLSTSYGQLG RAQLKFRECL ANVNDAVRAE  60
   61 NDGKEVLVPL TSSLYVPGKL NLGNSKLLVD IGTGYYVEKS AGEATEYYKR KCEYLASSIE 120
  121 NLNNAIDAKS VQIRAVQNIM QQKATATTAA TKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1fxkC
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits