YRC Public Data Repository - Protein Structure Prediction

Protein:	pdh1
Organism:	Schizosaccharomyces pombe
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdh1.

Description	E-value	Query Range	Subject Range
gi\|42544521, gi\|... - gi\|46105410\|ref\|XP_380509.1\| hypothetical protein FG00333.1 [Gibberella zeae PH-1], gi\|42544521\|gb\|E...	205.0	[0..9]	[215..10]
gi\|38105140, gi\|... - gi\|39942234\|ref\|XP_360654.1\| hypothetical protein MGG_03197 [Magnaporthe grisea 70-15], gb\|EAA51602....	203.0	[0..9]	[215..11]
gi\|85110884 - gi\|85110884\|ref\|XP_963680.1\| hypothetical protein NCU06839 [Neurospora crassa OR74A] gi\|28925366, gi\|... - gi\|32413290\|ref\|XP_327125.1\| hypothetical protein [Neurospora crassa], gi\|28925366\|gb\|EAA34444.1\| co...	198.0	[0..9]	[215..10]
gi\|116204633, gi... - gi\|88176328\|gb\|EAQ83796.1\| hypothetical protein CHGG_10200 [Chaetomium globosum CBS 148.51], gi\|1162...	193.0	[0..9]	[215..10]
CG9536-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG9536 (CG9536, FBgn0031818). It is a protein... gi\|220946438 - gi\|220946438\|gb\|ACL85762.1\| CG9536-PA [synthetic construct]	189.0	[0..3]	[209..21]
gi\|125987045, gi... - gi\|54645616\|gb\|EAL34354.1\| GA21862-PA [Drosophila pseudoobscura], gi\|125987045\|ref\|XP_001357285.1\| G...	184.0	[0..3]	[209..21]
gi\|67526469, gi\|... - gi\|67526469\|ref\|XP_661296.1\| hypothetical protein AN3692.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	177.0	[0..10]	[209..11]
gi\|116317790 - gi\|116317790\|emb\|CAH65766.1\| OSIGBa0148I18.3 [Oryza sativa (indica cultivar-group)]	173.0	[0..19]	[209..39]
gi\|58376053, gi\|... - gi\|58376053\|ref\|XP_307858.2\| ENSANGP00000018642 [Anopheles gambiae str. PEST], gi\|55246394\|gb\|EAA036...	173.0	[0..8]	[209..25]
gi\|157106361, gi... - gi\|157106361\|ref\|XP_001649289.1\| hypothetical protein AaeL_AAEL004497 [Aedes aegypti], gi\|108879890\|...	172.0	[0..8]	[209..26]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHFSKFSVT KRLLILEVLF SAISFGISIY IKVFGRSSIV TFFLLCFHLV PNALFLFPWT  60
   61 IITTSFVDAN VFTLLSSILI LSVYGVEIER SWGHKEYLLF CQFLTVIPNI AVLIPCFIAY 120
  121 KITDSHYLLV AIIQSTTAIQ AGILTAWYQL YSCKKEESSN KFLCPLSKYL IYLFLSIHLF 180
  181 YVFQSFPWTY FCLAVSGTCI SELYVLFVHP VVQELFHLES HTQLPI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.61
Match:	2ic8A
Description:	No description for 2ic8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits