YRC Public Data Repository - Protein Structure Prediction

Protein:	pla1
Organism:	Schizosaccharomyces pombe
Length:	566 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pla1.

Description	E-value	Query Range	Subject Range
gi\|46101730, gi\|... - gi\|71023817\|ref\|XP_762138.1\| hypothetical protein UM05991.1 [Ustilago maydis 521], ref\|XP_403606.1\| ...	558.0	[0..3]	[565..17]
gi\|220952732, gi... - gi\|220952732\|gb\|ACL88909.1\| hrg-PA [synthetic construct], gi\|220942518\|gb\|ACL83802.1\| hrg-PA [synthe... hrg-PA, hrg-PB, ... - The gene hiiragi is referred to in FlyBase by the symbol Dmel\hrg (CG9854, FBgn0015949). It is a pro...	544.0	[0..4]	[566..26]
PAPA_CANAL - Poly(A) polymerase PAPa OS=Candida albicans GN=PAPA PE=3 SV=1 PAPA_CANAL - Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1	543.0	[0..1]	[561..1]
gi\|40746747, gi\|... - gi\|67517193\|ref\|XP_658478.1\| hypothetical protein AN0874.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	542.0	[0..2]	[542..7]
gi\|44980886 - gi\|44980886\|gb\|AAS50769.1\| ABL002Cp [Ashbya gossypii ATCC 10895] gi\|44980886, gi\|... - gi\|45185228\|ref\|NP_982945.1\| ABL002Cp [Ashbya gossypii ATCC 10895], gi\|44980886\|gb\|AAS50769.1\| ABL00...	541.0	[0..1]	[566..1]
gi\|4062995 - gi\|4062995\|dbj\|BAA36217.1\| poly(A) polymerase isozyme [Candida albicans]	540.0	[0..1]	[561..1]
gi\|50422465, gi\|... - gi\|50422465\|ref\|XP_459799.1\| DhPAP1 [Debaryomyces hansenii CBS767], gi\|49655467\|emb\|CAG88038.1\| DhPA...	534.0	[0..1]	[561..1]
gi\|125810298, gi... - gi\|54636608\|gb\|EAL26011.1\| GA22075-PA [Drosophila pseudoobscura], gi\|125810298\|ref\|XP_001361433.1\| G...	532.0	[0..4]	[566..13]

Back

Predicted Domain #1

Region A:
Residues: [1-566]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKQWGITP PISTAPATEQ ENALNTALIN ELKNQNLFES PAESEKRVKV LDELQQITTE  60
   61 FVKKVSLAKH MNEKMANEAG GKIFTYGSYR LGVYGPGSDI DTLVVVPKHV SRDNFFQDLE 120
  121 PMLREREEVT DLAAVPDAYV PIIKFKFLGI SIDLIFARLS VPRVPRDLEL SDNNLLKGVE 180
  181 ERCVLSLNGT RVTDQILQLV PNRAVFKHAL RAIKFWAQRR AIYANVVGFP GGVAWAMMVA 240
  241 RICQLYPNAV SSVIVAKFFR ILHQWNWPQP ILLKPIEDGP LQVRIWNPKL YPSDKAHRMP 300
  301 IITPAYPSMC ATHNITLSTQ TIILREMVRA GEIADQIMVK ALPWSALFQK HDFFHRYKHY 360
  361 LTITAAAKTA EAQLKWAGLV ESKLRHLVTR LELVDAIALA HPFNKGFDKV YNCSSEEEAQ 420
  421 QVASGVTLEV AYESTDHEKL ANDTVNEEKA DNTESKADGS ENGEKQIFPV YTTTCYIGLE 480
  481 LEKKKGHPIK RLDISWPTQE FYELCKKWDK YDDTLMNVFI KNTKNTALPD EVFEPGEERP 540
  541 KATKKRSTAD TAHSTEQLKR QKVSTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	146.0
Match:	2hhpA
Description:	No description for 2hhpA was found.

Predicted functions:

Term	Confidence	Notes
polynucleotide adenylyltransferase activity	5.40967709450432	bayes_pls_golite062009
RNA binding	2.46555984694381	bayes_pls_golite062009
nucleotidyltransferase activity	2.12021443504286	bayes_pls_golite062009
nucleic acid binding	1.43322212500405	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.08480919674453	bayes_pls_golite062009
DNA binding	0.920001549206154	bayes_pls_golite062009
binding	0.888087430062829	bayes_pls_golite062009
catalytic activity	0.75232920999699	bayes_pls_golite062009
protein binding	0.516354942587518	bayes_pls_golite062009
transferase activity	0.432029324907561	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: