YRC Public Data Repository - Protein Structure Prediction

Protein:	ptc4
Organism:	Schizosaccharomyces pombe
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptc4.

Description	E-value	Query Range	Subject Range
gi\|73963080 - gi\|73963080\|ref\|XP_852144.1\| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 3 [Canis...	263.0	[0..32]	[380..4]
PPM1A_RABIT - Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1	262.0	[0..32]	[380..4]
PPM1A_RAT - Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1	262.0	[0..32]	[380..4]
CCDS9744.1_1 - null PPM1A - protein phosphatase, Mg2+/Mn2+ dependent, 1A gi\|114653343, gi... - gi\|114653347\|ref\|XP_509986.2\| PREDICTED: hypothetical protein LOC452950 isoform 9 [Pan troglodytes],... gi\|109083826, gi... - gi\|109083828\|ref\|XP_001096358.1\| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 5 [M... gi\|123996549, gi... - gi\|168279063\|dbj\|BAG11411.1\| protein phosphatase 1A [synthetic construct], gi\|123996549\|gb\|ABM85876....	261.0	[0..32]	[380..4]
PPM1A_BOVIN - Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1	261.0	[0..32]	[380..4]
gi\|109083832 - gi\|109083832\|ref\|XP_001095896.1\| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 1 [M...	261.0	[0..32]	[380..4]
gi\|68394439 - gi\|68394439\|ref\|XP_685043.1\| PREDICTED: protein phosphatase type 2C alpha 1 [Danio rerio]	261.0	[0..32]	[380..117]
gi\|50748830 - gi\|50748830\|ref\|XP_421422.1\| PREDICTED: similar to protein phosphatase 2C alpha; PP2Calpha [Gallus g...	261.0	[0..32]	[380..4]

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Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIRFLKRLR APLYIQNAYC SKNYFYRSFI QYYSPSNGPY LKISMNKAPQ SLGLCTARGD  60
   61 SPTNQDRMAY GYLNNLKDTT NRDSPFFYGL FDGHGGTECS EFLSTNLGKI IENQDLNDTE 120
  121 KILKEVHSVG GYMAGLKPPF SLRTVLQSRD EDLLWRARLY YSFLQADMDY LTNYARPSPD 180
  181 SAVPGAVGTV AIITSKNNLS YWESDSYIIH LAHVGDTRAL LCDSRTGRAH RLTFQHHPAD 240
  241 VEEARRLRRY NMGFSRDSFG QKRFAWVANT RSFGDGYKLK KLGVVAEPQL TSIHSLRDDW 300
  301 SFLTLLSDGI TDVVSDDEVV DIIKLSESPQ DAANNIIRYA QNVGAVDDIT CLVVRLPGWK 360
  361 KRTINDFTKN LRLEKSAYHP RRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	1a6qA
Description:	CRYSTAL STRUCTURE OF THE PROTEIN SERINE/THREONINE PHOSPHATASE 2C AT 2 A RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits