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View Structure Prediction Details

Protein: oxa102
Organism: Schizosaccharomyces pombe
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oxa102.

Description E-value Query
Range		 Subject
Range
gi|84318222 - gi|84318222|ref|ZP_00966649.1| COG0706: Preprotein translocase subunit YidC [Pseudomonas aeruginosa ...
 359.0 [0..2] [314..274]
gi|2739285, gi|1... - gi|2739285|emb|CAA63844.1| oxa1Sp2 [Schizosaccharomyces pombe], pir||T43703 respiratory protein oxa1...
 359.0 [0..1] [409..1]
YIDC_PSEA7 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain PA7) GN=yidC PE=3 SV=1
 359.0 [0..2] [314..281]
YIDC_PSEAB - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=yidC PE=3 SV=1
YIDC_PSEA8 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain LESB58) GN=yidC PE=3 SV=1
 358.0 [0..2] [314..281]
gi|107104669 - gi|107104669|ref|ZP_01368587.1| hypothetical protein PaerPA_01005748 [Pseudomonas aeruginosa PACS2]
 358.0 [0..2] [314..281]
YIDC_PSEAE - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /...
OXAA_PSEAE - Inner membrane protein oxaA OS=Pseudomonas aeruginosa GN=oxaA PE=3 SV=1
 358.0 [0..2] [314..281]
gi|23104609 - ref|ZP_00091071.1| COG0706: Preprotein translocase subunit YidC [Azotobacter vinelandii]
YIDC_AZOVD - Membrane protein insertase YidC OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=yidC PE=3 S...
 354.0 [0..5] [318..263]
YIDC_PSEU2 - Membrane protein insertase YidC OS=Pseudomonas syringae pv. syringae (strain B728a) GN=yidC PE=3 SV=...
 351.0 [0..3] [321..265]
YIDC_PSE14 - Membrane protein insertase YidC OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) G...
 351.0 [0..3] [322..265]
YIDC_PSEPU - Membrane protein insertase YidC OS=Pseudomonas putida GN=yidC PE=3 SV=1
tr|I7C0X3|I7C0X3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain DOT-T1E) GN=yidC PE=3 SV=1
YIDC_PSEPK - Membrane protein insertase YidC OS=Pseudomonas putida (strain KT2440) GN=yidC PE=3 SV=1
tr|E4R9L3|E4R9L3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain BIRD-1) GN=oxaA PE=3 SV=1
 350.0 [0..3] [322..262]

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Predicted Domain #1
Region A:
Residues: [1-84] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVIGRGIK FSSKSHYSVS CFLIATQGAK IRQIHTHNTF FKNFSFAKLG RNQRTSSLIK  60
   61 IHNSSTSFPK SRSEKVVYTP SLPL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.297 0.582 protein complex assembly b.1.1 Immunoglobulin
View Download 0.307 0.347 protein complex assembly d.19.1 MHC antigen-recognition domain
View Download 0.498 0.001 protein complex assembly a.74.1 Cyclin-like
View Download 0.453 0.001 integral to membrane d.95.2 Homing endonucleases
View Download 0.292 N/A N/A b.1.1 Immunoglobulin

Predicted Domain #2
Region A:
Residues: [85-324] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSVLASFSF LPHNILQNGL NTLHIWSGLP WWASIAACAV AMRIAVFPIM LKMMKTSAKL  60
   61 AIINPKVAEH MSVLSKAKAE GNSELMMQAT TQIQNLYKVN NVNPLNLLSA PVFQGILFIS 120
  121 FFYALKTMAG VPVEGFTDGG FWWVNDLSQP DPLHIFPVAN GLLMLLNIEL GSETGSNKVA 180
  181 MSPSMKKFFR FLCLASPLFT MNFPMAIFMY WFPSNVFSVF QGAFLRSSTI RHKLGLPEVP 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 10.853872
Match: PF02096.11
Description: No description for PF02096.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [325-409] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAMPVPNAQN ESFVKSFTDI VHGVQEKGKY PQASEILDAT RFLKTDTNNE QKPTNNSTIT  60
   61 KATTLSDNSQ NDKSSSVTKP TEKKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

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Created and Maintained by: Michael Riffle