YRC Public Data Repository - Protein Structure Prediction

Protein:	oxa101
Organism:	Schizosaccharomyces pombe
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oxa101.

Description	E-value	Query Range	Subject Range
gi\|91798521, gi\|... - gi\|92115431\|ref\|YP_575359.1\| putative inner membrane protein translocase component YidC [Chromohalob...	296.0	[0..8]	[285..301]
YIDC_HAEI8 - Membrane protein insertase YidC OS=Haemophilus influenzae (strain 86-028NP) GN=yidC PE=3 SV=1 gi\|229843940, gi... - gi\|229843940\|ref\|ZP_04464081.1\| putative inner membrane protein translocase component YidC [Haemophi...	294.0	[0..8]	[293..270]
gi\|46129072 - gi\|46129072\|ref\|ZP_00201990.1\| COG0706: Preprotein translocase subunit YidC [Haemophilus influenzae ...	294.0	[0..8]	[293..270]
gi\|84318222 - gi\|84318222\|ref\|ZP_00966649.1\| COG0706: Preprotein translocase subunit YidC [Pseudomonas aeruginosa ...	294.0	[0..10]	[285..306]
YIDC_PSEA7 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain PA7) GN=yidC PE=3 SV=1	294.0	[0..10]	[285..313]
YIDC_PSEPU - Membrane protein insertase YidC OS=Pseudomonas putida GN=yidC PE=3 SV=1 tr\|I7C0X3\|I7C0X3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain DOT-T1E) GN=yidC PE=3 SV=1 YIDC_PSEPK - Membrane protein insertase YidC OS=Pseudomonas putida (strain KT2440) GN=yidC PE=3 SV=1 tr\|E4R9L3\|E4R9L3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain BIRD-1) GN=oxaA PE=3 SV=1	294.0	[0..10]	[285..293]
YIDC_PSEP1 - Membrane protein insertase YidC OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=yidC PE=3 SV=1	293.0	[0..10]	[285..293]
YIDC_PSEAB - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=yidC PE=3 SV=1 YIDC_PSEA8 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain LESB58) GN=yidC PE=3 SV=1	293.0	[0..10]	[285..313]
gi\|23104609 - ref\|ZP_00091071.1\| COG0706: Preprotein translocase subunit YidC [Azotobacter vinelandii] YIDC_AZOVD - Membrane protein insertase YidC OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=yidC PE=3 S...	293.0	[0..9]	[286..291]
gi\|107104669 - gi\|107104669\|ref\|ZP_01368587.1\| hypothetical protein PaerPA_01005748 [Pseudomonas aeruginosa PACS2]	292.0	[0..10]	[285..313]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHFLIRPST RCAGSPHFNS TSSFLRKRLQ SKTILSKRLG FQFRPSSTNV LAEVSTATSG  60
   61 FNPSWWPYAL IQNTAYTINV YAG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.406	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.582	d.68.1	Translation initiation factor IF3, C-terminal domain
View	Download	0.454	d.58.36	Sulfite reductase, domains 1 and 3
View	Download	0.443	d.47.1	Ribosomal protein L11, N-terminal domain
View	Download	0.394	d.58.35	Pseudouridine synthase

Predicted Domain #2

Region A:
Residues: [84-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APWWVSIILT TLGVRLALTP VMIASFRNST KLSVIQPEMK KELEAIKTAK LDNDQLALNQ  60
   61 HSIALRGIYL KHNVNPFAIF ILPLTQSAVF FSFFYAIRKM SRLSVDGFTT GGLAWFKDLS 120
  121 IPDPYCILPI INAGLMFSGM QMNRANTAST IGNSTNWRTF FFLCCLLSPL LTAKLPAAIF 180
  181 MYWIPSSLFN IVQGYILKNP VVRSKLGFAP L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.619789
Match:	PF02096.11
Description:	No description for PF02096.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSIIEKQPSG FTLITNPIKS LKEFYKGVRD GFKTQYEQLQ KDVSRRAVAT TSASTIRPNS  60
   61 HYKKLKELNR SKKNSKKQSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.795	a.144.1	PABC (PABP) domain
View	Download	0.661	a.144.1	PABC (PABP) domain
View	Download	0.600	a.144.1	PABC (PABP) domain
View	Download	0.585	a.112.1	Description not found.
View	Download	0.539	a.144.1	PABC (PABP) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits