YRC Public Data Repository - Protein Structure Prediction

Protein:	orc1
Organism:	Schizosaccharomyces pombe
Length:	707 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for orc1.

Description	E-value	Query Range	Subject Range
gi\|114706805, gi... - gi\|114706805\|ref\|ZP_01439705.1\| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi HTC...	249.0	[0..313]	[707..135]
gi\|89348478, gi\|... - gi\|89362683\|ref\|ZP_01200487.1\| Peptidase M41, FtsH [Xanthobacter autotrophicus Py2], gi\|89348478\|gb\|...	249.0	[0..313]	[707..134]
gi\|114315948, gi... - gi\|114327774\|ref\|YP_744931.1\| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1], gi\|11...	248.0	[0..318]	[707..139]
gi\|27355428, gi\|... - gi\|27382257\|ref\|NP_773786.1\| metalloprotease [Bradyrhizobium japonicum USDA 110], gi\|27355428\|dbj\|BA... gi\|5531227 - gi\|5531227\|emb\|CAB51029.1\| metalloprotease FtsH [Bradyrhizobium japonicum]	246.0	[0..312]	[707..132]
gi\|90337060, gi\|... - gi\|90418980\|ref\|ZP_01226891.1\| ATP-dependent metalloprotease involved in cell division [Aurantimonas... gi\|90337060, gi\|... - gi\|90418980\|ref\|ZP_01226891.1\| ATP-dependent metalloprotease involved in cell division [Aurantimonas...	244.0	[0..313]	[707..135]
gi\|90426214, gi\|... - gi\|90426214\|ref\|YP_534584.1\| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris BisB18],...	244.0	[0..312]	[707..132]
gi\|15891238, gi\|... - gi\|15891238\|ref\|NP_356910.1\| hypothetical protein AGR_L_2253 [Agrobacterium tumefaciens str. C58], g... gi\|25308068 - pir\|\|E98271 metalloproteinase ftsH (AJ243808) [imported] - Agrobacterium tumefaciens (strain C58, Ce...	244.0	[0..318]	[707..154]
gi\|115520634, gi... - gi\|77740054\|ref\|ZP_00808543.1\| Peptidase M41, FtsH [Rhodopseudomonas palustris BisA53], gi\|77700135\|...	244.0	[0..312]	[707..132]
gi\|86748941, gi\|... - gi\|86748941\|ref\|YP_485437.1\| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris HaA2], g...	244.0	[0..312]	[707..132]
ftsH - ftsH metalloprotease (cell division protein) FtsH 1229602:1231518 forward MW:69829 gi\|192289727, gi... - gi\|192289727\|ref\|YP_001990332.1\| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris TIE-...	243.0	[0..312]	[707..132]

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Predicted Domain #1

Region A:
Residues: [1-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRKSLRSQ LLINGIDKSL LSDDSADSSD IDEEEVYGVW TEEPFQKEAG RSYYRSLKKN  60
   61 DVIYRVGDDI TVHDGDSSFY LGVICKLYEK AIDKHSGKKY VEAIWYSRAY AKRMEIKPEY 120
  121 LLPDRHINEV YVSCGRDENL TSCIIEHCNV YSEAEFFSKF PAGIPTKRKD LFPCNFFIRR 180
  181 GVHLKVNKYT EPLDWSYYAH NLERIEDLLV EMEENLRPTK KKSGSRGRGR PRKYPLPNVE 240
  241 SKESSSKVNS KDENFDLQDD SESSEDNLTI QPQTPRRRHK RSRHNSSNLA STPKRNGYKQ 300
  301 PLQITPLPIR MLSLEEFQGS PHRKARAMLH VASVPSTLQC RDNEFSTIFS NLESAIEEET 360
  361 GACLYISGTP GTGKTATVHE VIWNLQELSR EGQLPEFSFC EINGMRVTSA NQAYSILWES 420
  421 LTGERVTPIH AMDLLDNRFT HASPNRSSCV VLMDELDQLV THNQKVLYNF FNWPSLPHSR 480
  481 LIVVAVANTM DLPERILSNR ISSRLGLSRV PFEPYTHTQL EIIIAARLEA VRDDDVFSSD 540
  541 AIRFAARKVA AVSGDARRAL DICRRASELA ENKNGKVTPG LIHQAISEMT ASPLQKVLRN 600
  601 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [602-707]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFMQKVFLCA IVNRMRRSGF AESYVYEVLE EAERLLRVMT TPDAEAKFGE LILRRPEFGY  60
   61 VLSSLSENGV LYLENKSSRN ARVRLAIADD EIKLAFRGDS ELAGIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2dhrA
Description:	No description for 2dhrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits