YRC Public Data Repository - Protein Structure Prediction

Protein:	nut2
Organism:	Schizosaccharomyces pombe
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nut2.

Description	E-value	Query Range	Subject Range
gi\|50736031 - gi\|50736031\|ref\|XP_419024.1\| PREDICTED: similar to DNA segment, Chr 13, Wayne State University 50, e...	171.0	[0..1]	[127..74]
gi\|74224290 - gi\|74224290\|dbj\|BAE33733.1\| unnamed protein product [Mus musculus]	161.0	[0..1]	[127..1]
ENSCJAT00000016867 - null MED10_PONPY - Mediator of RNA polymerase II transcription subunit 10 - Pongo pygmaeus (Orangutan) MED10 - mediator complex subunit 10 gi\|114598920 - gi\|114598920\|ref\|XP_001143506.1\| PREDICTED: mediator of RNA polymerase II transcription, subunit 10 ... MED10_PONAB - Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1 MED10_BOVIN - Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1	160.0	[0..1]	[127..1]
MED10_XENLA - Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1	160.0	[0..1]	[127..1]
CCDS34134.1_1 - null gi\|109076692 - gi\|109076692\|ref\|XP_001082923.1\| PREDICTED: similar to Mediator complex subunit 10 CG5057-PA [Macaca...	159.0	[0..1]	[127..1]
MED10_XENTR - Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1	159.0	[0..1]	[127..1]
MED10_MACFA - Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1	158.0	[0..1]	[127..1]
gi\|46124599, gi\|... - gi\|46124599\|ref\|XP_386853.1\| hypothetical protein FG06677.1 [Gibberella zeae PH-1], gi\|42554770\|gb\|E...	156.0	[0..6]	[130..10]
gi\|62202758, gi\|... - gi\|62955367\|ref\|NP_001017699.1\| transcriptional mediator complex subunit 10 [Danio rerio], gi\|622027...	155.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDEMKSLAS RLEDTTQAFY DLALIVYNLE DTTPSDAIPE SLDTLIRDLK SLPDISRKVN  60
   61 NLIPQDVLEY IEQGRNPDVY ARQFSELVQK DNQYVNGKLY AIEGFQKAFA EEIKQAYPEV 120
  121 SSVVDKILNE GKVESTVS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.741	a.29.13	Description not found.
View	Download	0.685	a.25.1	Ferritin-like
View	Download	0.663	a.25.1	Ferritin-like
View	Download	0.662	a.25.1	Ferritin-like
View	Download	0.599	a.25.1	Ferritin-like
View	Download	0.538	a.24.3	Cytochromes
View	Download	0.463	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.415	a.133.1	Phospholipase A2, PLA2
View	Download	0.404	a.29.5	alpha-ketoacid dehydrogenase kinase, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits