YRC Public Data Repository - Protein Structure Prediction

Protein:	nuf2
Organism:	Schizosaccharomyces pombe
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nuf2.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	205.0	[0..39]	[440..1800]
gi\|48476973 - gi\|48476973\|gb\|AAT44534.1\| rhabdomyosarcoma antigen MU-RMS-40.7B [Homo sapiens]	175.0	[0..15]	[440..16]
gi\|114652395 - gi\|114652395\|ref\|XP_001150786.1\| PREDICTED: myosin, heavy polypeptide 7, cardiac muscle, beta [Pan t...	175.0	[0..15]	[440..639]
MYH7_HORSE - Myosin-7 OS=Equus caballus GN=MYH7 PE=2 SV=1	174.0	[0..15]	[440..772]
MYH7_CANLF - Myosin-7 OS=Canis lupus familiaris GN=MYH7 PE=1 SV=3	174.0	[0..15]	[440..772]
MYH7_PIG - Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2	173.0	[0..15]	[440..772]

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Predicted Domain #1

Region A:
Residues: [1-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKHTFPSL KRAEILECID GLGIPFTAKE LDQPTSKAVI PLYEEFLDLF MGLTRQNLEE  60
   61 KVNSLQDSVE NFEIIHESLR FTVFYQILSQ FMQNICFHDF TIQDLLKPDR NRLQLILSAV 120
  121 INFAKLREER LQQFDDDIQK RESLLETYTL LDAQRKDLEE KVLLSQDRKL ESEAIIKQNE 180
  181 ERNEEMFQSL IEDKRLCSQV RTEYDRIRME ASELKIRYHN VDSLMASTLE EIEKLQSSIV 240
  241 HSPEKLKGKI ADTSLRIQND RSQQVELDKK SKILHTKLNS LQLIEGDLNA CLKVLEECLV 300
  301 ELDKLEHATV LLSTNQELCD QIEINKKKLE FRKEQLLKQL SNAQEKLEHE QHSRNQKLEA 360
  361 AKQRMDNIRE EYKVITQERN KKIQETEKKN AMIEMTEQKI AGMREELESQ ISSITMEFEK 420
  421 LKSHVELYIA ELLRNLRSSN S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits