| Protein: | nhp2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 154 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhp2.
| Description | E-value | Query Range |
Subject Range |
|
|
179.0 | [0..4] | [148..208] |
|
|
166.0 | [0..4] | [148..62] |
|
|
165.0 | [0..4] | [148..118] |
|
|
164.0 | [0..4] | [148..96] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MAKDKKDHKH SGSTEDEYDS YLPALMPIAK PLAPKKLNKK MMKTVKKASK QKHILRGVKE 60
61 VVKAVRKGEK GLVILAGDIS PMDVISHIPV LCEDNNVPYL YTVSKELLGE ASNTKRPTSC 120
121 VMIVPGGKKK DMSKVEEYKE SYEEIIKEVP ALEV
|
| Detection Method: |  |
| Confidence: | 28.522879 |
| Match: | 2aifA |
| Description: | Crystal Structure of High Mobility Like Protein, NHP2, putative from Cryptosporidium parvum |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| snoRNA binding | 4.95788328272916 | bayes_pls_golite062009 |
| RNA binding | 4.7078532107994 | bayes_pls_golite062009 |
| structural constituent of ribosome | 3.68798692352408 | bayes_pls_golite062009 |
| structural molecule activity | 3.12718364266877 | bayes_pls_golite062009 |
| 2.493460131667 | bayes_pls_golite062009 | |
| nucleic acid binding | 2.39301463005357 | bayes_pls_golite062009 |
| binding | 1.74903521776827 | bayes_pls_golite062009 |
| mRNA binding | 1.63088955572344 | bayes_pls_golite062009 |
| catalytic activity | 0.264002643439785 | bayes_pls_golite062009 |
| protein binding | 0.131685221037103 | bayes_pls_golite062009 |
