YRC Public Data Repository - Protein Structure Prediction

Protein:	sod2
Organism:	Schizosaccharomyces pombe
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sod2.

Description	E-value	Query Range	Subject Range
gi\|39940058, gi\|... - gi\|39940058\|ref\|XP_359566.1\| hypothetical protein MGG_05211 [Magnaporthe grisea 70-15], gb\|EAA52519....	317.0	[0..1]	[454..1]
gi\|66853689, gi\|... - gi\|71002740\|ref\|XP_756051.1\| Na+/H+ antiporter Nha1 [Aspergillus fumigatus Af293], gi\|66853689\|gb\|EA... gi\|159130104 - gi\|159130104\|gb\|EDP55218.1\| Na+/H+ antiporter Nha1 [Aspergillus fumigatus A1163]	315.0	[0..1]	[454..1]
gi\|28394448 - gi\|28394448\|gb\|AAM08675.1\| Nha1p [Aspergillus fumigatus]	314.0	[0..1]	[454..1]
gi\|83771078 - gi\|83771078\|dbj\|BAE61210.1\| unnamed protein product [Aspergillus oryzae] gi\|238502401, gi... - gi\|238502401\|ref\|XP_002382434.1\| Na+/H+ antiporter Nha1 [Aspergillus flavus NRRL3357], gi\|220691244\|... gi\|169775753 - gi\|169775753\|ref\|XP_001822343.1\| hypothetical protein [Aspergillus oryzae RIB40]	312.0	[0..1]	[454..1]
gi\|46116506, gi\|... - gi\|46116506\|ref\|XP_384271.1\| hypothetical protein FG04095.1 [Gibberella zeae PH-1], gi\|42549454\|gb\|E...	308.0	[0..1]	[454..1]
gi\|85081304 - gi\|85081304\|ref\|XP_956694.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32403806, gi\|... - gi\|40882149\|emb\|CAF05976.1\| related to Na+/H+ antiporter CNH1 [Neurospora crassa], gi\|32403806\|ref\|X...	307.0	[0..1]	[454..1]
gi\|27543904 - gi\|27543904\|dbj\|BAC54734.1\| Na+/H+ exchanger AnNHA1 [Emericella nidulans var. lata] gi\|40741966, gi\|... - gi\|67900526\|ref\|XP_680519.1\| hypothetical protein AN7250.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	307.0	[0..1]	[454..1]
gi\|90298566, gi\|... - gi\|90298566\|gb\|EAS28197.1\| hypothetical protein CIMG_09401 [Coccidioides immitis RS], gi\|119174919\|r...	306.0	[0..1]	[454..1]
gi\|88183705, gi\|... - gi\|88183705\|gb\|EAQ91173.1\| hypothetical protein CHGG_03108 [Chaetomium globosum CBS 148.51], gi\|1162...	303.0	[0..1]	[454..1]
gi\|169613773, gi... - gi\|169613773\|ref\|XP_001800303.1\| hypothetical protein SNOG_10020 [Phaeosphaeria nodorum SN15], gi\|11...	302.0	[0..1]	[454..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWRQLDIDK VHLALIVAGG FITFFCYFSE VFRKKLLVGE AVLGSITGLI FGPHAAKLVD  60
   61 PFSWGDHGDY LTVEICRIVL DVRVFASAIE LPGAYFQHNF RSIIVMLLPV MAYGWLVTAG 120
  121 FAYALFPQIN FLGSLLIAGC ITSTDPVLSA LIVGEGPLAK KTPERIRSLL IAESGCNDGM 180
  181 AVPFFYFAIK LLTVKPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [198-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNAGRDWVLL VVLYECAFGI FFGCVIGYLL SFILKHAQKY RLIDAISYYS LPLAIPLLCS  60
   61 GIGTIIGVDD LLMSFFAGIL FNWN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [282-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLFSKNISAC SVPAFIDQTF SLLFFTYYGT IIPWNNFNWS VEGLPVWRLI VFSILTLVCR  60
   61 RLPVVFSVKP LVPDIKTWKE ALFVGHFGPI GVCAVYMAFL AKLLLSPDEI EKSIYESTTV 120
  121 FSTLNEIIWP IISFVILSSI IVHGFSIHVL VIWGKLKSLY LNRKVTKSDS DLELQVIGVD 180
  181 KSQEDYV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits