YRC Public Data Repository - Protein Structure Prediction

Protein:	met16
Organism:	Schizosaccharomyces pombe
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for met16.

Description	E-value	Query Range	Subject Range
gi\|159127965 - gi\|159127965\|gb\|EDP53080.1\| 3'-phosphoadenosine-5'-phosphosulfate reductase [Aspergillus fumigatus A... gi\|66852589, gi\|... - gi\|71000537\|ref\|XP_754952.1\| 3'-phosphoadenosine-5'-phosphosulfate reductase Met16 [Aspergillus fumi...	235.0	[0..12]	[265..38]
gi\|32417434, gi\|... - gi\|38566885\|emb\|CAE76190.1\| probable PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE [Neurospora crassa], ... gi\|85115415 - gi\|85115415\|ref\|XP_964870.1\| phosphoadenosine phosphosulfate reductase [Neurospora crassa OR74A]	234.0	[0..2]	[264..33]
gi\|86556476, gi\|... - gi\|86607934\|ref\|YP_476696.1\| phosophoadenylyl-sulfate reductase [Synechococcus sp. JA-2-3B'a(2-13)],... gi\|86607934 - gi\|86607934\|ref\|YP_476696.1\| phosophoadenylyl-sulfate reductase [Cyanobacteria bacterium Yellowstone...	230.0	[0..2]	[245..4]
gi\|6706278 - gi\|6706278\|emb\|CAB65911.1\| adenosine 5'-phosphosulphate reductase [Lemna minor]	229.0	[0..2]	[253..69]
gi\|10945373 - gi\|10945373\|gb\|AAG24520.1\|AF227433_1 3'-phosphoadenosine-5'-phosphosulfate reductase [Penicillium ch...	228.0	[0..13]	[265..39]
gi\|51457940 - gi\|51457940\|gb\|AAU03359.1\| adenylyl-sulfate reductase [Lycopersicon esculentum]	225.0	[0..2]	[249..67]
gi\|12831474 - gi\|12831474\|gb\|AAB05871.2\| PAPS-reductase-like protein [Catharanthus roseus]	225.0	[0..2]	[250..66]
gi\|46128301, gi\|... - gi\|46128301\|ref\|XP_388704.1\| hypothetical protein FG08528.1 [Gibberella zeae PH-1], gi\|42549262\|gb\|E...	225.0	[0..9]	[266..40]
gi\|49082812 - gi\|49082812\|gb\|AAT50806.1\| PA1756 [synthetic construct]	224.0	[0..5]	[251..13]
CYSH_PSEA8 - Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=cysH PE=3 SV=... gi\|107101187 - gi\|107101187\|ref\|ZP_01365105.1\| hypothetical protein PaerPA_01002219 [Pseudomonas aeruginosa PACS2] gi\|126166782, gi... - gi\|254234851\|ref\|ZP_04928174.1\| 3'-phosphoadenosine-5'-phosphosulfate reductase [Pseudomonas aerugin... gi\|2072312 - gi\|2072312\|gb\|AAB53743.1\| CysH [Pseudomonas aeruginosa] gi\|194551083, gi... - gi\|84328077\|ref\|ZP_00976088.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSH_PSEAB - Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysH PE=3...	224.0	[0..5]	[251..13]

Back

Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIDTPANK LQAKTLFHPE HLEYINKQLS ELSPQDILKW CRWTLPSLFQ TSALGLSGLV  60
   61 IMDMLSKMDM NVPLIFINTL HHFPETLDLL EKVKTKYPNV PVHVYRCAEA ANEKEFAQKF 120
  121 GEKLWETDES RYDFLVKVEP ASRAYSDLNV LAVFTGRRRS QGGERGSLPI VQLDGPVLKI 180
  181 NPLANWSFTE VHNYIITNNV PYNELLNKGY RSVGDWHSTQ PVREGEDERA GRWRGREKTE 240
  241 CGLHSHPQSK FAQYMAELKK KETADQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	2goyA
Description:	No description for 2goyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits