YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC4C3.04c
Organism:	Schizosaccharomyces pombe
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4C3.04c.

Description	E-value	Query Range	Subject Range
CE35174 - status:Partially_confirmed UniProt:Q7YWN1 protein_id:CAE18044.1	126.0	[0..5]	[98..43]
gi\|187037135, gi... - gi\|39597186\|emb\|CAE59413.1\| Hypothetical protein CBG02782 [Caenorhabditis briggsae], gi\|187037135\|em... gi\|157751530 - gi\|157751530\|ref\|XP_001679477.1\| Hypothetical protein CBG02782 [Caenorhabditis briggsae AF16]	124.0	[0..5]	[98..43]
gi\|31211879, gi\|... - ref\|XP_314924.1\| ENSANGP00000012377 [Anopheles gambiae], gi\|118785830\|ref\|XP_314924.3\| AGAP008798-PA... AGAP008798-PA - Guanine nucleotide exchange factor MSS4\|protein_coding\|3R:17959192:17959647:-1\|gene:AGAP008798	123.0	[0..6]	[98..25]
gi\|61369643, gi\|... - gi\|61369656\|gb\|AAX43367.1\| RAB interacting factor [synthetic construct], gi\|61369649\|gb\|AAX43366.1\| ...	119.0	[0..6]	[97..21]
gi\|114571866 - gi\|114571866\|ref\|XP_514105.2\| PREDICTED: RAB-interacting factor [Pan troglodytes] gi\|109018839 - gi\|109018839\|ref\|XP_001106028.1\| PREDICTED: similar to RAB-interacting factor [Macaca mulatta]	119.0	[0..6]	[97..21]
gi\|61359547, gi\|... - gi\|61359564\|gb\|AAX41736.1\| RAB interacting factor [synthetic construct], gi\|61359557\|gb\|AAX41735.1\| ... RABIF - RAB interacting factor	119.0	[0..6]	[97..21]
CG7787-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7787 (CG7787, FBgn0032020). It is a protein... gi\|220957834, gi... - gi\|220957834\|gb\|ACL91460.1\| CG7787-PA [synthetic construct], gi\|220948562\|gb\|ACL86824.1\| CG7787-PA [...	119.0	[0..2]	[97..18]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLRIVCQH CPSVVFNNKR PDVVKRPTMS AMLHSETQED LETDDFFLLK DPFAFDNVSV  60
   61 SKPLANNYKL LACADCEKGP LGYYDSKNNE YLLLCSLEKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2fu5A
Description:	No description for 2fu5A was found.

Predicted functions:

Term	Confidence	Notes
binding	1.36438138191491	bayes_pls_golite062009
GTPase regulator activity	1.2447728025682	bayes_pls_golite062009
nucleoside-triphosphatase regulator activity	1.22386653092425	bayes_pls_golite062009
guanyl-nucleotide exchange factor activity	0.965822802580955	bayes_pls_golite062009
enzyme regulator activity	0.656440922856329	bayes_pls_golite062009
protein binding	0.072370908138261	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: