YRC Public Data Repository - Protein Structure Prediction

Protein:	etr1
Organism:	Schizosaccharomyces pombe
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for etr1.

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	289.0	[0..21]	[370..12]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	271.0	[0..21]	[370..1]
gi\|71733591, gi\|... - gi\|71733591\|ref\|YP_272602.1\| quinone oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], g...	268.0	[0..21]	[370..1]
gi\|77385669, gi\|... - gi\|77461666\|ref\|YP_351173.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	267.0	[0..21]	[370..1]
gi\|63254289, gi\|... - gi\|66043582\|ref\|YP_233423.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	266.0	[0..21]	[368..1]
gi\|68347561, gi\|... - gi\|70733262\|ref\|YP_263035.1\| oxidoreductase, zinc-binding [Pseudomonas fluorescens Pf-5], gi\|6834756...	265.0	[0..21]	[370..1]
gi\|89351306, gi\|... - gi\|89359757\|ref\|ZP_01197577.1\| quinone oxidoreductase [Xanthobacter autotrophicus Py2], gi\|89351306\|...	265.0	[0..12]	[369..1]
gi\|94417709, gi\|... - gi\|94417709\|ref\|ZP_01297526.1\| hypothetical protein PaerP_01000487 [Pseudomonas aeruginosa PA7], gi\|...	264.0	[0..21]	[370..1]
gi\|84317897, gi\|... - gi\|84317897\|ref\|ZP_00966332.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|116053381, gi... - gi\|32044610\|ref\|ZP_00141711.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|107104336 - gi\|107104336\|ref\|ZP_01368254.1\| hypothetical protein PaerPA_01005411 [Pseudomonas aeruginosa PACS2]	263.0	[0..21]	[370..1]
gi\|11351622 - pir\|\|A82991 probable oxidoreductase PA5234 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9951543, gi\|1... - gi\|9951543\|gb\|AAG08619.1\|AE004936_2 probable oxidoreductase [Pseudomonas aeruginosa PAO1], gi\|156004... gi\|218774565, gi... - gi\|218894336\|ref\|YP_002443206.1\| putative oxidoreductase [Pseudomonas aeruginosa LESB58], gi\|2187745... gi\|84324062, gi\|... - gi\|84324062\|ref\|ZP_00972127.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct...	263.0	[0..21]	[370..1]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFKTAVRR FSSTSITRGM AKAIAYSEYG NPKEVLRAVS YNVPKCSKNQ VNVRFLASPI  60
   61 NPSDINQIQG VYPSKPPFTN DVCSSKPSAV AGNEGLVEVV DVGDQFKGTF SPGQWAILGS 120
  121 VNLGSWRTEM NIDGRSLVPV DKSAFPSIAE AATLSVNPCT AYCLLQHVVQ LNKGDWFIQD 180
  181 GANSMVGIAT IQLAKHFGYK SINVVRNRPD IEKLKEQLKS LGATIVITDE ELMDRKTMKQ 240
  241 KVPEWIQGGE VKLGIDCVSG RVAAEMAKYM SKGATMATFG GMSRQPLPVP VSLLIFKNLK 300
  301 FHGFWVTKWK SEHPEEFLKI IHKVEDFYRN GTLKTVNTEL VSLKEDADEK TFLDTFLNAI 360
  361 EGHGKKIIKF EH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1zsyA
Description:	The structure of human mitochondrial 2-enoyl thioester reductase (CGI-63)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits