YRC Public Data Repository - Protein Structure Prediction

Protein:	mis12
Organism:	Schizosaccharomyces pombe
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mis12.

Description	E-value	Query Range	Subject Range
MTW1_YEAST - Kinetochore-associated protein MTW1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTW1... MTW1 - Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins ... gi\|190406683 - gi\|190406683\|gb\|EDV09950.1\| hypothetical protein SCRG_05669 [Saccharomyces cerevisiae RM11-1a] gi\|151941357 - gi\|151941357\|gb\|EDN59728.1\| mis12-like protein [Saccharomyces cerevisiae YJM789]	269.0	[0..1]	[252..11]
gi\|28918444, gi\|... - gi\|32411675\|ref\|XP_326318.1\| predicted protein [Neurospora crassa], gi\|28918444\|gb\|EAA28118.1\| predi... gi\|85084649 - gi\|85084649\|ref\|XP_957354.1\| hypothetical protein [Neurospora crassa OR74A]	233.0	[0..5]	[175..14]
gi\|46436118, gi\|... - gi\|68483014\|ref\|XP_714541.1\| hypothetical protein CaO19.1367 [Candida albicans SC5314], gi\|68482822\|... orf19.8947, orf1... - orf19.1367 CGDID:CAL0003887 Assembly 19, Contig19-10113 (26207, 25263) CDS, reverse complemented, tr...	227.0	[0..1]	[186..13]
gi\|45188240, gi\|... - gi\|45188240\|ref\|NP_984463.1\| ADR367Cp [Ashbya gossypii ATCC 10895], gi\|44983084\|gb\|AAS52287.1\| ADR36... gi\|44983084 - gi\|44983084\|gb\|AAS52287.1\| ADR367Cp [Ashbya gossypii ATCC 10895]	205.0	[0..1]	[202..11]
gi\|46111287, gi\|... - gi\|46111287\|ref\|XP_382701.1\| hypothetical protein FG02525.1 [Gibberella zeae PH-1], gi\|42545414\|gb\|E...	197.0	[0..1]	[141..11]
gi\|46100036, gi\|... - gi\|71020193\|ref\|XP_760327.1\| hypothetical protein UM04180.1 [Ustilago maydis 521], ref\|XP_401795.1\| ...	186.0	[0..1]	[143..58]
gi\|145016298, gi... - gi\|39976803\|ref\|XP_369789.1\| hypothetical protein MGG_06304 [Magnaporthe grisea 70-15], gb\|EAA56333....	182.0	[0..1]	[142..11]
gi\|50310333, gi\|... - gi\|50310333\|ref\|XP_455186.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644322\|emb\|CAG9789... gi\|49644322\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	171.0	[0..1]	[257..11]
gi\|50413086, gi\|... - gi\|50413086\|ref\|XP_457205.1\| hypothetical protein DEHA0B05500g [Debaryomyces hansenii CBS767], gi\|49...	158.0	[0..1]	[183..11]
gi\|49529174, gi\|... - gi\|50294898\|ref\|XP_449860.1\| hypothetical protein CAGL0M11924g [Candida glabrata CBS138], gi\|4952917... gi\|49529174 - gi\|49529174\|emb\|CAG62840.1\| unnamed protein product [Candida glabrata]	154.0	[0..1]	[257..11]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVELLEFTP LSFIDDVINI TNQLLYKGVN GVDKAFSQTR FAKKAPQEIE EGLHKFEVLF  60
   61 ESVVDRYYDG FEVYTLRNIF SYPPELKGYM RTFGKDVDYS ITTEQDAAMD QAIQEAAEKL 120
  121 VVKMQLRRDL RMRLSRKREK KTEIEKHLER ISFLNKVPEN WQVTLPETTD FLLDQLGNLQ 180
  181 HAVKRVVEAS PTVHSREVDE RITYLEKGYE RLSNPIDQQK DFWSHHLSKL ESTANTETAN 240
  241 NIHKLLLSSE KDVGHTDEP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.51
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits