YRC Public Data Repository - Protein Structure Prediction

Protein:	mip1
Organism:	Schizosaccharomyces pombe
Length:	1313 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mip1.

Description	E-value	Query Range	Subject Range
gi\|85074787 - gi\|85074787\|ref\|XP_965761.1\| hypothetical protein NCU00621 [Neurospora crassa OR74A] gi\|32408641, gi\|... - gi\|32408641\|ref\|XP_324801.1\| hypothetical protein [Neurospora crassa], gi\|28927574\|gb\|EAA36525.1\| hy...	1330.0	[0..11]	[1298..53]
gi\|67536938, gi\|... - gi\|67536938\|ref\|XP_662243.1\| hypothetical protein AN4639.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	1316.0	[0..12]	[1297..73]
gi\|46128653, gi\|... - gi\|46128653\|ref\|XP_388880.1\| hypothetical protein FG08704.1 [Gibberella zeae PH-1], gi\|42548030\|gb\|E...	1306.0	[0..8]	[1308..20]
gi\|39970815, gi\|... - gi\|86196587\|gb\|EAQ71225.1\| hypothetical protein MGCH7_ch7g632 [Magnaporthe grisea 70-15], gi\|3997081...	1291.0	[0..21]	[1301..186]
gi\|159128801 - gi\|159128801\|gb\|EDP53915.1\| meiotic regulator-interacting protein, putative [Aspergillus fumigatus A... gi\|66847017, gi\|... - gi\|70989073\|ref\|XP_749386.1\| TORC1 growth control complex subunit Kog1 [Aspergillus fumigatus Af293]...	1285.0	[0..8]	[1297..71]
gi\|83769883 - gi\|83769883\|dbj\|BAE60018.1\| unnamed protein product [Aspergillus oryzae] gi\|169775105 - gi\|169775105\|ref\|XP_001822020.1\| hypothetical protein [Aspergillus oryzae RIB40]	1285.0	[0..9]	[1297..67]
gi\|115386148, gi... - gi\|115386148\|ref\|XP_001209615.1\| WD-repeat protein mip1 [Aspergillus terreus NIH2624], gi\|114190613\|...	1283.0	[0..8]	[1297..72]
gi\|109118990 - gi\|109118990\|ref\|XP_001110471.1\| PREDICTED: similar to raptor isoform 2 [Macaca mulatta]	1232.0	[0..57]	[1303..8]
gi\|73964853 - gi\|73964853\|ref\|XP_850487.1\| PREDICTED: similar to raptor [Canis familiaris]	1231.0	[0..57]	[1303..8]
RPTOR_MOUSE - Regulatory-associated protein of mTOR OS=Mus musculus GN=Rptor PE=1 SV=1	1231.0	[0..57]	[1310..8]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDRISEVSG SSRARRSVLS YGTTETGSDR YTENSNIATE NGVDTASSMI DGIQSGFPQP  60
   61 RHGFEEEYNN AEYINMLEQV FYMYYTDKRH RGVISKKNAE PTET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.347	0.921	conjugation with cellular fusion	a.39.1	EF-hand

Predicted Domain #2

Region A:
Residues: [105-861]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHDWRMRERL KTVSAALLVC LNIGVDPPDV IKPNPAAKYE CWIDPFSLPA SKALEAIGKN  60
   61 LQQQYETLSM RTRYRHYLDP AIEEVKKLCI GQRRNAKEER ILFHYNGHGV PMPTASGEIW 120
  121 VFNKNYTQYI PVSLYDLQSW LGAPCIYVYD CSAAGNIIVN FNRFAEQRDK EALRIAKQNP 180
  181 NVLAMPSHTS CIQLAACGPK ETLPMNPDLP ADLFTSCLTS PIEISVRWYV LQNPFPNKLN 240
  241 LNMLLKIPGR LQDRRTPLGE LNWIFTAITD TIAWNVFPKH LFRRLFRQDL MVAALFRNFL 300
  301 LAERIMLVHS CHPQSSPELP PTHDHPMWNS WDLAIDNCLS QLPDMLDAES KGIAYEYKHS 360
  361 TFFSEQLTAF EVWLSQGLIS RKPPDQLPLV LQVLLSQVHR LRALILLSKF LDLGVWAVDL 420
  421 ALSIGIFPYV LKLLQSPAIE LKPVLVFIWA RILAVDDSCQ ADLLKDNGYG YFVQILNPNS 480
  481 SIFPSSNISE HRAMCAFILS VFCRGFPQGQ LACLNPQVLS HCLSHLNSPD SLLRQWACLC 540
  541 ISQLWENYSE AKWSGTRDNA HVKLAEIIVD SVPEVRASVL TAFTTFLGFP EKTEEVVAVE 600
  601 TYIAIAALAA LSDASPLVRH ELVIFLSHFV VNYKKQLMVV AYESSLADIL EKKNHNSISA 660
  661 STIYETVWQA VLVLAADPSI EISLAAEAII NYVYQSMLNS ELRESFLAFL LQHLPALHKA 720
  721 SLSKDTDTNS VTSDPKPHPF VPSVSENKIL NRSFSLT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1w63A
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [862-1248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSLKGLALSL AGSDRASELL SLNGENKPAE SNLNHLTSAK VPGPPAFNEL EYQSELDMPL  60
   61 TSYLFDWSRK YFTEPQMRPN EDDEPGSICY NQRLWRRNRN EKLIYRTRPL AEYSTNGRWN 120
  121 QQLMTFNNTI APRKLMFHQF EDQLITLGDK DIIQVWDWRR NRCLNSFKTS ASATTNVTDM 180
  181 QLLNEDDVAL LMTGSSDGTI KLYRDYENEK VELVTSWNSL SDLVFGDRNA SLLMSWQQNC 240
  241 GHLLVAGDVR VIRIWDASKE ICYANLPVRS SNSITSLTSD LVGCNIIVAG FSDGVLRVYD 300
  301 KRLPARDSLT DVWKEHSSEI VNVEMQSSGM RELISASSDG EVKLWDIRMN HSLQTFSTDN 360
  361 SGLTSLTVHS HAPVYATGSS NQSIKIW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #4

Region A:
Residues: [1249-1313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTLGQNINTF RENPRFLNQP KPSSLMCLKF HPHHLLLACG DNTDSRVNLY SCTKNEIHTD  60
   61 SPNEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits