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View Structure Prediction Details

Protein: mid2
Organism: Schizosaccharomyces pombe
Length: 704 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mid2.

Description E-value Query
Range
Subject
Range
BUD4 - Protein involved in bud-site selection and required for axial budding pattern; localizes with septin...
439.0 [0..65] [699..761]
orf19.11733 - INT1 CGDID:CAL0000261 Assembly 19, Contig19-20202 (74547, 79526) CDS, translated using codon table 1...
gi|46442575, gi|... - gi|68470378|ref|XP_720693.1| integrin-like protein [Candida albicans SC5314], gi|46442575|gb|EAL0186...
348.0 [0..169] [700..1092]
INT1_CANAL - Integrin alpha chain-like protein - Candida albicans (Yeast)
343.0 [0..169] [700..1092]
gi|85081144 - gi|85081144|ref|XP_956665.1| hypothetical protein [Neurospora crassa OR74A]
gi|32403250, gi|... - gi|32403250|ref|XP_322238.1| hypothetical protein [Neurospora crassa], gi|28917738|gb|EAA27429.1| hy...
337.0 [0..168] [689..727]
MELT_RAT - Ventricular zone-expressed PH domain-containing protein homolog 1 OS=Rattus norvegicus GN=Veph1 PE=2...
323.0 [0..196] [692..330]
gi|42554702, gi|... - gi|46125869|ref|XP_387488.1| hypothetical protein FG07312.1 [Gibberella zeae PH-1], gi|42554702|gb|E...
313.0 [0..168] [701..930]
gi|94374473, gi|... - gi|94376294|ref|XP_983679.1| PREDICTED: similar to Centaurin-delta 1 (Cnt-d1) isoform 2 [Mus musculu...
308.0 [0..156] [686..78]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASQQDQHA KMYLADIHRA LRIPSPIPST DYECSDYAST IASISRESTM RNFNRSNISS  60
   61 TAPSFAESED AEDGDSFPYD QTLSNSSSFD DHQSLLPFST EVRRTPTYSV MNETDSSSTS 120
  121 VEDVNKENIL SLNDSCLIKL SDDEASNKSS RSST

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRNSIKSNSS NQGHGDIPIP KKNPARSVCN SKLFNEDTLP AEFEEVSISP PVKLELPTHS  60
   61 HNSSDTSFTN SIVSSVSDMV GLGEGINSIA SFGFSEDSSS FQDIKTPPRL SFADENRENC 120
  121 RTDIYRSDSI HEYEEPLTSS ITSLDSPHVL DENAPIPLLP KVVSLPD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [322-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRFTNVLSAF DALTRTYLLR QNSKVVHATS QKQEMQTSRR VVNSCYMPES LSRNLSSSLQ  60
   61 QTGGSGRLFV RLMEIRNLTI PLASGMTTRF TYTISGKHIQ VPWNALHSTT KIENEYTFDE 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1bc9A
Description: CYTOHESIN-1/B2-1 SEC7 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [443-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISSSIVCTLR AAYDPPKVRT RSTLGKVFST NKRKSMTTDP VSEALHGFVS EDGTFGEVTI  60
   61 NTDSVSRTAL GRCQSMVLPI MNKWTVDPAA KDVKPLPRKV GELEIHVFFL PALPVSLKEL 120
  121 PASIESAMYD LKLAEWDRTL LCDGYLCQQG GDCPYWRRRY FQLIGSKLVA FQQFSKVRRA 180
  181 TIDLSEATHI VDDNHYSDEE ELEGYLYFES GFRIIFSNGD YIDFYAETVG EKDEWMSTLR 240
  241 QHLGQCSMVH KNWTKSFLSL SF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.69897
Match: 2q13A
Description: No description for 2q13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle