YRC Public Data Repository - Protein Structure Prediction

Protein:	sam1
Organism:	Schizosaccharomyces pombe
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sam1.

Description	E-value	Query Range	Subject Range
gi\|70780020 - gi\|70780020\|gb\|AAZ08331.1\| AdoMet synthetase [synthetic construct]	709.0	[0..2]	[382..4]
METK_PHOLL - S-adenosylmethionine synthase OS=Photorhabdus luminescens subsp. laumondii GN=metK PE=3 SV=1 METK_PHOLL - S-adenosylmethionine synthase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1...	706.0	[0..4]	[381..3]
gi\|254037990, gi... - gi\|254037990\|ref\|ZP_04872048.1\| S-adenosylmethionine synthetase [Escherichia sp. 1_1_43], gi\|2268396... gi\|91073898, gi\|... - gi\|91212324\|ref\|YP_542310.1\| S-adenosylmethionine synthetase [Escherichia coli UTI89], gi\|91073898\|g... gi\|226899446, gi... - gi\|237706406\|ref\|ZP_04536887.1\| S-adenosylmethionine synthetase [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|24114197, gi\|... - ref\|NP_708707.1\| methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor,... gi\|26109771, gi\|... - gi\|26249363\|ref\|NP_755403.1\| S-adenosylmethionine synthetase [Escherichia coli CFT073], gi\|26109771\|...	704.0	[0..1]	[381..5]
gi\|254289612, gi... - gi\|254289612\|ref\|YP_003055360.1\| S-adenosylmethionine synthetase [Escherichia coli BL21(DE3)], gi\|25... gi\|251786195, gi... - gi\|251786195\|ref\|YP_003000499.1\| hypothetical protein B21_02735 [Escherichia coli BL21], gi\|24237846... METK_ECOBW - S-adenosylmethionine synthase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=metK PE=3 SV=1 gi\|227888496, gi... - gi\|227888496\|ref\|ZP_04006301.1\| S-adenosylmethionine synthetase [Escherichia coli 83972], gi\|2278347... METK_SHISS - S-adenosylmethionine synthase OS=Shigella sonnei (strain Ss046) GN=metK PE=3 SV=1 gi\|168773420, gi... - gi\|187770947\|gb\|EDU34791.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC4196], ... METK_ECOL6 - S-adenosylmethionine synthase OS=Escherichia coli O6 GN=metK PE=3 SV=2 gi\|189000642, gi... - gi\|189000642\|gb\|EDU69628.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC4076], ... gi\|192930746, gi... - gi\|75258550\|ref\|ZP_00729972.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli E22], gi\|1... gi\|189373892, gi... - gi\|189373892\|gb\|EDU92308.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC869], g... gi\|75515278, gi\|... - gi\|75515278\|ref\|ZP_00737462.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli 53638], gi... METK_ECOLC - S-adenosylmethionine synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=metK PE=... gi\|168797516, gi... - gi\|189379804\|gb\|EDU98220.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC508], g... gi\|56383766, gi\|... - gi\|56480215\|ref\|NP_708707.2\| S-adenosylmethionine synthetase [Shigella flexneri 2a str. 301], gi\|563... METK_ECODH - S-adenosylmethionine synthase OS=Escherichia coli (strain K12 / DH10B) GN=metK PE=3 SV=1 METK_ECOSM - S-adenosylmethionine synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=metK PE=3 SV=1 METK_SHIDS - S-adenosylmethionine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metK PE=3 SV=1 gi\|195936564 - gi\|195936564\|ref\|ZP_03081946.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC402... gi\|89109719, gi\|... - gi\|89109719\|ref\|AP_003499.1\| methionine adenosyltransferase 1 [Escherichia coli str. K-12 substr. W3... gi\|208806270, gi... - gi\|208806270\|ref\|ZP_03248607.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC420... METK_ECO24 - S-adenosylmethionine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=metK PE=3 SV=1 METK_ECOHS - S-adenosylmethionine synthase OS=Escherichia coli O9:H4 (strain HS) GN=metK PE=3 SV=1 METK_ECOL6 - S-adenosylmethionine synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=metK... gi\|194436893, gi... - gi\|83587660\|ref\|ZP_00926287.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli 101-1], gi... gi\|162138378 - gi\|162138378\|ref\|YP_542310.2\| S-adenosylmethionine synthetase [Escherichia coli UTI89] gi\|192959310, gi... - gi\|75239488\|ref\|ZP_00723459.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli E110019], ... gi\|188017763, gi... - gi\|188017763\|gb\|EDU55885.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC4113], ... gi\|190907904, gi... - gi\|75241262\|ref\|ZP_00725124.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli F11], gi\|1... gi\|189358493, gi... - gi\|189358493\|gb\|EDU76912.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC4401], ... gi\|194415755, gi... - gi\|75212436\|ref\|ZP_00712460.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli B171], gi\|... gi\|189369445, gi... - gi\|189369445\|gb\|EDU87861.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC4501], ... gi\|75228896, gi\|... - gi\|75228896\|ref\|ZP_00715493.1\| COG0192: S-adenosylmethionine synthetase [Escherichia coli B7A], gi\|1... gi\|168766948, gi... - gi\|189363617\|gb\|EDU82036.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC4486], ... METK_ECO55 - S-adenosylmethionine synthase OS=Escherichia coli (strain 55989 / EAEC) GN=metK PE=3 SV=1 METK_ECO7I - S-adenosylmethionine synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=metK PE=3 SV=1 METK_ECOLU - S-adenosylmethionine synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=metK PE=3 S... EG10589 - S-adenosylmethionine synthetase / S-adenosylmethionine synthase; methionine adenosyltransferase; eth... gi\|208734303, gi... - gi\|208813026\|ref\|ZP_03254355.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC404... gi\|208821064, gi... - gi\|208821064\|ref\|ZP_03261384.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. EC404... METK_ECO5E - S-adenosylmethionine synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=metK PE=3 SV=1 METK_ECOSE - S-adenosylmethionine synthase OS=Escherichia coli (strain SE11) GN=metK PE=3 SV=1 METK_ECO27 - S-adenosylmethionine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=metK PE=3 SV=1 METK_ECO8A - S-adenosylmethionine synthase OS=Escherichia coli O8 (strain IAI1) GN=metK PE=3 SV=1 gi\|218366702, gi... - gi\|218559933\|ref\|YP_002392846.1\| S-adenosylmethionine synthetase [Escherichia coli S88], gi\|21836670... gi\|254594294, gi... - gi\|254794894\|ref\|YP_003079731.1\| methionine adenosyltransferase 1 [Escherichia coli O157:H7 str. TW1... gi\|218691066, gi... - gi\|218691066\|ref\|YP_002399278.1\| S-adenosylmethionine synthetase [Escherichia coli ED1a], gi\|2184286... gi\|253974753, gi... - gi\|254162852\|ref\|YP_003045960.1\| S-adenosylmethionine synthetase [Escherichia coli B str. REL606], g... METK_ECOLI - S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synthetase) (M... METK_SHIFL - S-adenosylmethionine synthase OS=Shigella flexneri GN=metK PE=3 SV=2 METK_ECO57 - S-adenosylmethionine synthase OS=Escherichia coli O157:H7 GN=metK PE=3 SV=2 gi\|30064258, gi\|... - gi\|30064258\|ref\|NP_838429.1\| S-adenosylmethionine synthetase [Shigella flexneri 2a str. 2457T], gi\|3... gi\|12517485, gi\|... - gi\|15803481\|ref\|NP_289514.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 EDL933], gi\|1... EG10589 - S-adenosylmethionine synthetase / S-adenosylmethionine synthase; methionine adenosyltransferase; eth... sp\|B7UHY9\|METK_ECO27 - S-adenosylmethionine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=metK PE=3 SV=1 gi\|15833072, gi\|... - gi\|15833072\|ref\|NP_311845.1\| S-adenosylmethionine synthetase [Escherichia coli O157:H7 str. Sakai], ... gi\|117625169, gi... - gi\|117625169\|ref\|YP_854157.1\| S-adenosylmethionine synthetase [Escherichia coli APEC O1], gi\|1155142... METK_ECOL5 - S-adenosylmethionine synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=metK PE=3 SV=1 gi\|124526158, gi... - gi\|124526158\|ref\|ZP_01698163.1\| Methionine adenosyltransferase [Escherichia coli B], gi\|124502262\|gb... METK_SHIF8 - S-adenosylmethionine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=metK PE=3 SV=1	703.0	[0..1]	[381..1]
METK_ECOLI - (P0A817) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synth... METK_SHIFL - (P0A820) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synth... METK_ECO57 - (P0A819) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synth... METK_ECOL6 - (P0A818) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synth...	702.0	[0..4]	[381..2]
METK_SHIB3 - S-adenosylmethionine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metK PE... METK_SHIBS - S-adenosylmethionine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=metK PE=3 SV=1	701.0	[0..1]	[381..1]
gi\|195633475, gi... - gi\|195633475\|gb\|EDX51889.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... METK_SALCH - S-adenosylmethionine synthase OS=Salmonella choleraesuis (strain SC-B67) GN=metK PE=3 SV=1 gi\|205347064, gi... - gi\|205347064\|gb\|EDZ33695.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... METK_SALPA - S-adenosylmethionine synthase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=metK PE=3 SV=... gi\|168236158, gi... - gi\|197290694\|gb\|EDY30048.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... gi\|205331702, gi... - gi\|205331702\|gb\|EDZ18466.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... METK_SALSV - S-adenosylmethionine synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=metK PE=3 SV=1 gi\|194456435, gi... - gi\|194470071\|ref\|ZP_03076055.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... METK_SALNS - S-adenosylmethionine synthase OS=Salmonella newport (strain SL254) GN=metK PE=3 SV=1 gi\|168819881, gi... - gi\|205343447\|gb\|EDZ30211.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... gi\|167990384, gi... - gi\|205331134\|gb\|EDZ17898.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... gi\|205322287, gi... - gi\|205322287\|gb\|EDZ10126.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica ser... METK_SALCH - S-adenosylmethionine synthetase OS=Salmonella choleraesuis GN=metK PE=3 SV=1 gi\|29143352, gi\|... - gi\|29143352\|ref\|NP_806694.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica se... gi\|16761865 - gi\|16761865\|ref\|NP_457482.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica se... METK_SALPA - S-adenosylmethionine synthase OS=Salmonella paratyphi A GN=metK PE=3 SV=1 METK_SALCH - S-adenosylmethionine synthase OS=Salmonella choleraesuis GN=metK PE=3 SV=1 gi\|204322717, gi... - gi\|204928395\|ref\|ZP_03219595.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... METK_SALTY - S-adenosylmethionine synthase OS=Salmonella typhimurium GN=metK PE=3 SV=2 gi\|200387327, gi... - gi\|200387327\|ref\|ZP_03213939.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... METK_SALPK - S-adenosylmethionine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=metK PE=3 SV=1 gi\|197243409, gi... - gi\|197265154\|ref\|ZP_03165228.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... gi\|214002394 - gi\|214002394\|ref\|ZP_03413129.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... gi\|213648501 - gi\|213648501\|ref\|ZP_03378554.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... gi\|213163035 - gi\|213163035\|ref\|ZP_03348745.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... METK_SALEP - S-adenosylmethionine synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=metK PE=3 SV=1 lcl\|NC_016856.1_... - [gene=metK] [protein=S-adenosylmethionine synthetase] [protein_id=YP_005239235.1] [location=3270814.... gi\|238909888 - gi\|238909888\|ref\|ZP_04653725.1\| S-adenosylmethionine synthetase [Salmonella enterica subsp. enterica... METK_SALTI - S-adenosylmethionine synthase OS=Salmonella typhi GN=metK PE=3 SV=2 METK_SALTY - S-adenosylmethionine synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=met... METK_SALTI - S-adenosylmethionine synthetase OS=Salmonella typhi GN=metK PE=3 SV=2 METK_SALTY - S-adenosylmethionine synthetase OS=Salmonella typhimurium GN=metK PE=3 SV=2	701.0	[0..1]	[381..1]
METK_GEOKA - S-adenosylmethionine synthase OS=Geobacillus kaustophilus (strain HTA426) GN=metK PE=3 SV=1 METK_GEOKA - S-adenosylmethionine synthase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1	700.0	[0..2]	[380..3]
gi\|238725540, gi... - gi\|77976235\|ref\|ZP_00831745.1\| COG0192: S-adenosylmethionine synthetase [Yersinia intermedia ATCC 29...	700.0	[0..1]	[380..1]
gi\|238798628, gi... - gi\|77961486\|ref\|ZP_00825322.1\| COG0192: S-adenosylmethionine synthetase [Yersinia mollaretii ATCC 43...	699.0	[0..1]	[380..1]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTFLFTSE SVGEGHPDKI CDQISDAILD ACLKDDPFSK VACETASKTG MVMVFGEITT  60
   61 RSQIDYQKVI RNTIKSIGYD DSEKGFDYKT CNVLVAIEQQ SPDIAQGLHY EKALEELGAG 120
  121 DQGIMFGYAT DETPEKLPLT ILLAHKLNAA MSVARRDGSL PWLRPDTKTQ VTIEYEEENG 180
  181 AVIPRRVDTI VVSAQHADSI STEDLRSEIL EKIIKPTVPA HLLDEKTVYH IQPSGRFVVG 240
  241 GPQGDAGLTG RKIIVDTYGG WGAHGGGAFS GKDYSKVDRS AAYAARWIAK SLVAAGLARR 300
  301 CLVQLSYAIG VAEPLSIFVN TYGTSSKTSA ELVEIIRKNF DLRPGVLVKS LKLQTPFYLS 360
  361 TASYGHFTDQ SKPWEQPKEL KF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2p02A
Description:	No description for 2p02A was found.

Predicted functions:

Term	Confidence	Notes
methionine adenosyltransferase activity	8.00759843092519	bayes_pls_golite062009
transferase activity	1.78879119839291	bayes_pls_golite062009
binding	1.70779292877479	bayes_pls_golite062009
catalytic activity	1.59111295908728	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	1.11999094477144	bayes_pls_golite062009
protein binding	0.298204436433395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: