YRC Public Data Repository - Protein Structure Prediction

Protein:	meu22
Organism:	Schizosaccharomyces pombe
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for meu22.

Description	E-value	Query Range	Subject Range
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	323.0	[0..2]	[555..60]
AGP1_YEAST - General amino acid permease AGP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGP1 PE... AGP1 - Low-affinity amino acid permease with broad substrate range, involved in uptake of asparagine, gluta...	319.0	[0..3]	[556..61]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	318.0	[0..22]	[566..6]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	314.0	[0..3]	[556..90]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	314.0	[0..2]	[563..53]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	311.0	[0..34]	[563..54]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	307.0	[0..2]	[563..83]
gi\|41745538 - gi\|41745538\|gb\|AAS10168.1\| general amino acid permease [Penicillium chrysogenum]	306.0	[0..9]	[563..21]

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Predicted Domain #1

Region A:
Residues: [1-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKFYEDID SKLENAMLSQ IESSTITCDG KSLNTLPTPK QEDVEFGVPL QPEDTQDLQR  60
   61 KLKPRHMQMI AIGGCVGTGL FVGSGNALAD GGPASILIAF AVIGTYVLFT TSALAELSAI 120
  121 YPVSGSFYTY FSKFIDPAWG FAVGIQYWLS FAVTVPLELT VAPLIINFWN ASGPVSIWIS 180
  181 VFYVIIIAIN IWGTEGYGEV EFFLSIMKVI SVIGFVILSI IIAAGGVPTD DRGVIGVSYW 240
  241 KQPLVFNNGF KGLCAVSVIA IFSLSGTELV GLAASEAKNP QKTVPAAVKQ IFWRIFLFYI 300
  301 VALFMLTLVV PSDLPGLRTS DNSNVLISPF VIAIQLANIR ALPSIMNVVI LLSTLSVGNS 360
  361 ASYAASRALF ALAKNGYAPK IFNKTNKRGH PIYAIAVTLL FGSIAYFTEA GVGGALFGWL 420
  421 LSICGLSTTF IWGSICLAHI QFRRAWKIQN RKLEDLPYRS IFGVYGSIYG VAMTILALIA 480
  481 QFYVAVFPIG KKPNPVDFFQ AYMAAPILII SFVAWKFFRR TSFVRIEKID LSEGAHGEQK 540
  541 QNLEPVINIP VEEIDFPMKV ATKESMKNVE KNAL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.49
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits