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View Structure Prediction Details

Protein: cdc23
Organism: Schizosaccharomyces pombe
Length: 593 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc23.

Description E-value Query
Range
Subject
Range
MCM10_MOUSE - Protein MCM10 homolog OS=Mus musculus GN=Mcm10 PE=1 SV=1
591.0 [0..10] [526..110]
gi|109505206, gi... - gi|109506166|ref|XP_001071383.1| PREDICTED: similar to minichromosome maintenance protein 10 [Rattus...
576.0 [0..9] [526..158]
gi|75517852 - gi|75517852|gb|AAI01728.1| Minichromosome maintenance complex component 10 [Homo sapiens]
573.0 [0..9] [526..112]
gi|114629400 - gi|114629400|ref|XP_001140807.1| PREDICTED: minichromosome maintenance protein 10 isoform 2 [Pan tro...
567.0 [0..9] [526..112]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDPFIAEEN DLDLEEKRLQ RQLNEIQEKK RLRSAQKEAS SENAEVIQVP RSPPQQVRVL  60
   61 TVSSPSKLKS PKRLILGIDK GKTGKDVSLG KGPRGPLPKP FHERLAEARN QERKRSDKLK 120
  121 TMKKNRKQSF QRKRNILEDG KSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEKFPMKCDE IDPYSRQAIV IRYISDEVAK ENIGGNQVYL IHQLLKLVRA PKFEAPEVDN  60
   61 YVVMGIVASN SGTRETVNGN KYCMLTLTDL KWQLECFLFG KAFERYWKIQ SGTVIALLNP 120
  121 EVLKPKNPDI GRFSLKLDSE YDVLLEIGRS KHLGYCSSRR KSGELCKHWL DKRAGDVCEY 180
  181 HVDLAVQRSM STRTEFASSM ATMH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [348-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPRARREKRF RGQGFQGYFA GEKYSAIPNA VAGLYDAEDA VQTERERKER YKKQRAQAER  60
   61 EREILVRLSK RCCASSSSSS NSNNLSTGMS MRTLGHQYLN LQGSGVKNLH DKGNPTALSK 120
  121 DSEIDSSTKK PSVLASFNAS IMNPKSSLPS FSNSAILGTN DAASGTPVPQ DTTSTKVSPA 180
  181 VVFTSSPRIF SPQSLRKIGF DPTHSADAST THSTATGLSR SGSLKNIKFR YEFTESDDED 240
  241 DLEIVP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle