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View Structure Prediction Details

Protein: mam4
Organism: Schizosaccharomyces pombe
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mam4.

Description E-value Query
Range
Subject
Range
LBR_MOUSE - Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
174.0 [0..4] [235..391]
gi|73961491 - gi|73961491|ref|XP_547512.2| PREDICTED: similar to Lamin B receptor (Integral nuclear envelope inner...
171.0 [0..18] [235..394]
gi|154152031, gi... - gi|76637075|ref|XP_870187.1| PREDICTED: similar to Lamin B receptor isoform 2 [Bos taurus], gi|15415...
171.0 [0..18] [235..397]
gi|62088608 - gi|62088608|dbj|BAD92751.1| lamin B receptor variant [Homo sapiens]
168.0 [0..18] [235..392]
gi|109018100, gi... - gi|109018102|ref|XP_001094600.1| PREDICTED: lamin B receptor isoform 4 [Macaca mulatta], gi|10901810...
168.0 [0..18] [235..391]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLHTSIAV ASICLTSAFL GCVFGLGFFV WIIYGYSIGG FFAFLSLFHL LEFYITARFQ  60
   61 GSQLSWDSFI LNNGKAYWLA MLVGLLECLL SGGKSFAKVI NC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRFPSFLINF IFSVYQTSAL GFLCLGQYLR SSAMVQAGQS FSHIVASKRN KDHLLVTDGI  60
   61 YAYVRHPSYV GFFIWALGTQ MLLGNFVSTL LFSLVLWKFF SQRITTEEAY LVSFFGDSYE 120
  121 QYRKKVPSGI PLIP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 51.508638
Match: PF04140.5
Description: No description for PF04140.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle