YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC23G7.11
Organism:	Schizosaccharomyces pombe
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC23G7.11.

Description	E-value	Query Range	Subject Range
gi\|68512267, gi\|... - gi\|68561573\|ref\|ZP_00600866.1\| Endonuclease III/Nth [Rubrobacter xylanophilus DSM 9941], gi\|68512267...	176.0	[0..20]	[213..8]
gi\|34811453, gi\|... - gi\|34811456\|pdb\|1ORP\|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent Intermediate: E...	176.0	[0..25]	[213..17]
gi\|20808188 - gi\|20808188\|ref\|NP_623359.1\| predicted EndoIII-related endonuclease [Thermoanaerobacter tengcongensi... gi\|20808188, gi\|... - gi\|20808188\|ref\|NP_623359.1\| EndoIII-related endonuclease [Thermoanaerobacter tengcongensis MB4], gi...	176.0	[0..15]	[213..5]
gi\|221087143, gi... - gi\|221087143\|ref\|ZP_03556682.1\| endonuclease III [Geobacillus sp. Y412MC61], gi\|220708793\|gb\|EED6416... gi\|56380546, gi\|... - gi\|56420704\|ref\|YP_148022.1\| endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) [Geobacill... gi\|229331602, gi... - gi\|229497724\|ref\|ZP_04391424.1\| endonuclease III [Geobacillus sp. Y412MC52], gi\|229331602\|gb\|EEN9713...	175.0	[0..25]	[213..14]
gi\|51893925, gi\|... - gi\|51893925\|ref\|YP_076616.1\| endonuclease III [Symbiobacterium thermophilum IAM 14863], gi\|51857614\|...	174.0	[0..19]	[213..9]
gi\|91073918, gi\|... - gi\|91212344\|ref\|YP_542330.1\| adenine DNA glycosylase [Escherichia coli UTI89], gi\|91073918\|gb\|ABE087... gi\|226899425, gi... - gi\|237706385\|ref\|ZP_04536866.1\| adenine DNA glycosylase [Escherichia sp. 3_2_53FAA], gi\|226899425\|gb...	173.0	[0..2]	[211..1]
gi\|134052870, gi... - gi\|88945261\|ref\|ZP_01148475.1\| Endonuclease III/Nth [Desulfotomaculum reducens MI-1], gi\|88925134\|gb...	173.0	[0..16]	[213..3]
gi\|109645022, gi... - gi\|68206735\|ref\|ZP_00558916.1\| Endonuclease III/Nth [Desulfitobacterium hafniense DCB-2], gi\|6816934...	173.0	[0..21]	[213..7]
gi\|10174315, gi\|... - gi\|15614261\|ref\|NP_242564.1\| endonuclease III (DNA repair) [Bacillus halodurans C-125], gi\|10174315\|... gi\|25292133 - pir\|\|B83862 endonuclease III (DNA repair) nth [imported] - Bacillus halodurans (strain C-125)	173.0	[0..15]	[213..4]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDSDYKRA EKHLSSIDNK WSSLVKKVGP CTLTPHPEHA PYEGIIRAIT SQKLSDAATN  60
   61 SIINKFCTQC SDNDEFPTPK QIMETDVETL HECGFSKLKS QEIHIVAEAA LNKQIPSKSE 120
  121 IEKMSEEELM ESLSKIKGVK RWTIEMYSIF TLGRLDIMPA DDSTLKNEAK EFFGLSSKPQ 180
  181 TEEVEKLTKP CKPYRTIAAW YLWQIPKLHR KGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	2h56A
Description:	No description for 2h56A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits