YRC Public Data Repository - Protein Structure Prediction

Protein:	mag1
Organism:	Schizosaccharomyces pombe
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mag1.

Description	E-value	Query Range	Subject Range
gi\|10174315, gi\|... - gi\|15614261\|ref\|NP_242564.1\| endonuclease III (DNA repair) [Bacillus halodurans C-125], gi\|10174315\|... gi\|25292133 - pir\|\|B83862 endonuclease III (DNA repair) nth [imported] - Bacillus halodurans (strain C-125)	182.0	[0..26]	[225..8]
gi\|113461208, gi... - gi\|23467008\|ref\|ZP_00122593.1\| COG0177: Predicted EndoIII-related endonuclease [Haemophilus somnus 1... gi\|168825935, gi... - gi\|170717806\|ref\|YP_001784869.1\| endonuclease III [Haemophilus somnus 2336], gi\|168825935\|gb\|ACA3130...	182.0	[0..23]	[224..4]
gi\|134052870, gi... - gi\|88945261\|ref\|ZP_01148475.1\| Endonuclease III/Nth [Desulfotomaculum reducens MI-1], gi\|88925134\|gb...	181.0	[0..24]	[224..4]
gi\|28202547, gi\|... - gi\|28210111\|ref\|NP_781055.1\| endonuclease III [Clostridium tetani E88], gi\|28202547\|gb\|AAO34992.1\| e...	181.0	[0..26]	[225..3]
gi\|126097154, gi... - gi\|126208362\|ref\|YP_001053587.1\| endonuclease III [Actinobacillus pleuropneumoniae L20], gi\|12609715... gi\|190150214, gi... - gi\|190150214\|ref\|YP_001968739.1\| endonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP... gi\|32033526 - gi\|32033526\|ref\|ZP_00133853.1\| COG0177: Predicted EndoIII-related endonuclease [Actinobacillus pleur...	180.0	[0..23]	[224..4]
gi\|34811453, gi\|... - gi\|34811456\|pdb\|1ORP\|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent Intermediate: E...	180.0	[0..29]	[226..14]
gi\|33152238, gi\|... - gi\|33152238\|ref\|NP_873591.1\| endonuclease III, DNA (apurinic or apyrimidinic site) lyase [Haemophilu...	180.0	[0..23]	[224..4]
gi\|20808188 - gi\|20808188\|ref\|NP_623359.1\| predicted EndoIII-related endonuclease [Thermoanaerobacter tengcongensi... gi\|20808188, gi\|... - gi\|20808188\|ref\|NP_623359.1\| EndoIII-related endonuclease [Thermoanaerobacter tengcongensis MB4], gi...	180.0	[0..23]	[226..6]
gi\|221087143, gi... - gi\|221087143\|ref\|ZP_03556682.1\| endonuclease III [Geobacillus sp. Y412MC61], gi\|220708793\|gb\|EED6416... gi\|56380546, gi\|... - gi\|56420704\|ref\|YP_148022.1\| endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) [Geobacill... gi\|229331602, gi... - gi\|229497724\|ref\|ZP_04391424.1\| endonuclease III [Geobacillus sp. Y412MC52], gi\|229331602\|gb\|EEN9713...	180.0	[0..29]	[226..11]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDIEEKEE IVTSLTKAEI HLSGLDENWK RLVKLVGNYR PNRSMEKKEP YEELIRAVAS  60
   61 QQLHSKAANA IFNRFKSISN NGQFPTPEEI RDMDFEIMRA CGFSARKIDS LKSIAEATIS 120
  121 GLIPTKEEAE RLSNEELIER LTQIKGIGRW TVEMLLIFSL NRDDVMPADD LSIRNGYRYL 180
  181 HRLPKIPTKM YVLKHSEICA PFRTAAAWYL WKTSKLADYT KPVRPKKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	2h56A
Description:	No description for 2h56A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits