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View Structure Prediction Details

Protein: sla1
Organism: Schizosaccharomyces pombe
Length: 298 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sla1.

Description E-value Query
Range
Subject
Range
gi|76633747 - gi|76633747|ref|XP_881817.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
203.0 [0..44] [295..87]

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Predicted Domain #1
Region A:
Residues: [1-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEEQKEEI KDISSKQENS SEVPKAEEAG KVVESQKDTT SEEKKEETTE KKEDDGKKDL  60
   61 SFDEAEVLKQ VEFYFSDTNL PHDKFLWTTS QKNDGWVPIQ TIANFKRMRR FQPLEAIVNA 120
  121 LRKSPELLEV DEAGEKVRRM IPLVRVDNKS VMERSVYCKG FGDEKDDTQI ALEKFFEENA 180
  181 GPISAVRMRR DDDKKFKGSV FVEFKEPDVA NKFLEKVKTA PLKWGEDELT IMSKKEYVDM 240
  241 KAELHKNDPP KFSSKRRRFD AFKEMDRQRP GKYSNRGRKF KKQRSSNASE EKPSAASE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 1ytyA
Description: Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle