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View Structure Prediction Details

Protein: lag1
Organism: Schizosaccharomyces pombe
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lag1.

Description E-value Query
Range
Subject
Range
gi|1675382 - gi|1675382|gb|AAB19113.1| longevity assurance factor [Schizosaccharomyces pombe]
400.0 [0..1] [378..1]
gi|109016494 - gi|109016494|ref|XP_001106777.1| PREDICTED: similar to LAG1 longevity assurance homolog 2 isoform 1 ...
381.0 [0..22] [375..275]
CERS4_MOUSE - Ceramide synthase 4 OS=Mus musculus GN=Cers4 PE=1 SV=1
371.0 [0..23] [388..1]
gi|109494930, gi... - gi|157819977|ref|NP_001100587.1| LAG1 homolog, ceramide synthase 4 [Rattus norvegicus], gi|149015624...
371.0 [0..23] [389..1]
gi|73996690 - gi|73996690|ref|XP_534805.2| PREDICTED: similar to LAG1 longevity assurance homolog 5 [Canis familia...
363.0 [0..27] [373..12]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRKADEKH HMSSSSLTND RSYIRNLSNR KTSISRKVPI TRTLEDPSNF VAKDGTKLVQ  60
   61 APLFLLVWQK EICLSIIAIC FACLLSPSLR PYAEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIFLSYKQPD GSYGKGPKDA CFPIFWVIVF TAFRVIVMDY VFRPFVLNWG VRNRKVIIRF  60
   61 CEQGYSFFYY LCFWFLGLYI YRSSNYWSNE EKLF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.721246
Match: PF08390.2
Description: No description for PF08390.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [190-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDYPQYYMSP LFKAYYLIQL GFWLQQILVL HLEQRRADHW QMFAHHIVTC ALIILSYGFN  60
   61 FLRVGNAILY IFDLSDYILS GGKMLKYLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [279-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGKICDYLFG IFVASWVYSR HYLFSKILRV VVTNAPEIIG GFHLDVPNGY IFNKPIYIAF  60
   61 IILLFTLQLL IYIWFGMIVK VAYRVFSGEE ATDSRSDDEG EDEEASSTNE DK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle