YRC Public Data Repository - Protein Structure Prediction

Protein:	kms2
Organism:	Schizosaccharomyces pombe
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kms2.

Description	E-value	Query Range	Subject Range
kms1 - meiotic spindle pole body protein Kms1 KMS1_SCHPO - Karyogamy meiotic segregation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=km...	412.0	[0..7]	[311..7]
gi\|6473133 - gi\|6473133\|dbj\|BAA87097.1\| Hypothetical nuclear protein [Schizosaccharomyces pombe]	228.0	[0..22]	[153..1]
gi\|70802107, gi\|... - gi\|70802107\|gb\|AAZ12013.1\| hypothetical protein, conserved [Trypanosoma brucei], gi\|62358803\|gb\|AAX7... gi\|72390555, gi\|... - gi\|72390555\|ref\|XP_845572.1\| hypothetical protein [Trypanosoma brucei TREU927], gi\|71852203\|ref\|XP_8...	51.0	[0..139]	[283..325]
gi\|56805553 - gi\|56805553\|dbj\|BAD83399.1\| autolysin [Staphylococcus warneri]	50.0	[0..89]	[293..39]
gi\|76648509 - gi\|76648509\|ref\|XP_614710.2\| PREDICTED: similar to kinesin family member 15 [Bos taurus]	49.0	[0..42]	[389..576]
gi\|55251137, gi\|... - gi\|55251137\|emb\|CAH69154.1\| novel protein similar to vertebrate CDC42 binding protein kinase beta (D...	49.0	[0..143]	[318..476]
gi\|41584179, gi\|... - gi\|42519889\|ref\|NP_965819.1\| cell wall-associated serine proteinase [Lactobacillus johnsonii NCC 533...	48.0	[0..84]	[297..1738]
CWLO_BACSU - Peptidoglycan DL-endopeptidase CwlO OS=Bacillus subtilis (strain 168) GN=cwlO PE=1 SV=2 gi\|221315757 - gi\|221315757\|ref\|ZP_03597562.1\| hypothetical protein BsubsN3_18762 [Bacillus subtilis subsp. subtili... gi\|221324957 - gi\|221324957\|ref\|ZP_03606251.1\| hypothetical protein BsubsS_18881 [Bacillus subtilis subsp. subtilis... gi\|221320672 - gi\|221320672\|ref\|ZP_03601966.1\| hypothetical protein BsubsJ_18725 [Bacillus subtilis subsp. subtilis... CWLO_BACSU, YVCE... - (P40767) Hypothetical protein yvcE (PSPA2), Peptidoglycan DL-endopeptidase CwlO OS=Bacillus subtilis...	48.0	[0..113]	[279..118]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEYIPFDDI VRQYDPDYTG KVSIQAFLEI VDDVDALRLN PEAPLLDNEQ RQSAQDFIKD  60
   61 NSEIVVSTSE IKNLFYELTG LDPDTLPVNK LALRENGVLP RKSVAKPQKI SENRIKRKDM 120
  121 FYQDASYITP RKGSPLSHST PLSMFRTKNE YGSNKGFSHI NKENADDSLI QQLYERIELQ 180
  181 AAELRSKDEQ VKELNARNAK LLEELDSSEE ACKSCYTQAK TWEKKFREAL RDSKEYAAQL 240
  241 QTIHEEYEQQ QAHIVRMEEL IHAVEKERKT ETDYMKKESL SEQKERGAFM ESNMILEEKV 300
  301 AHLQLENEQL RLFFKEKAPQ PFQNHPPYQN LKITFPSPFF HIPYIPKTET LNDSQFAAGL 360
  361 SLLASELESQ KNLLKKFENL KKKSSKDFLS PSTILSNAFS KVSLPNSLIL RVLFFSLLFI 420
  421 IGIHIFYFLF FHVATIQQWP FLFWLPSTKF DNRWSPT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	1y1uA
Description:	Structure of unphosphorylated STAT5a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits