YRC Public Data Repository - Protein Structure Prediction

Protein:	kms1
Organism:	Schizosaccharomyces pombe
Length:	607 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kms1.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	207.0	[0..4]	[554..2335]
gi\|4249695 - gi\|4249695\|gb\|AAD13769.1\| myosin heavy chain [Rana catesbeiana]	183.0	[0..3]	[547..276]
MYH1 - myosin, heavy chain 1, skeletal muscle, adult h0010399 - null	182.0	[0..3]	[547..1340]
MYH1_MOUSE - Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1	181.0	[0..3]	[547..1343]
gi\|109113339 - gi\|109113339\|ref\|XP_001118262.1\| PREDICTED: myosin, heavy polypeptide 2, skeletal muscle, adult [Mac...	181.0	[0..3]	[547..1095]
gi\|34870884, gi\|... - ref\|XP_213345.2\| similar to Myosin heavy chain, skeletal muscle, adult 1 (Myosin heavy chain IIx/d) ...	181.0	[0..3]	[547..1343]
gi\|8250661 - gi\|8250661\|gb\|AAB29713.2\| myosin heavy chain [Rattus sp.]	181.0	[0..3]	[547..293]
MYH2_HORSE - Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1	181.0	[0..3]	[547..1338]

Back

Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNERDFDLI FDSYDFKHEG KVHLSNFLPI INDLQLLHPA SAPPLLSEFQ KQCTLEFVRQ  60
   61 NADLSITKDN FRDVYKKLTE NEDDSFANQA EKPSMEQQNS KNSIKEDANE HSVNSAHSKS 120
  121 SSNASPESLN PSQMMSKRLS LPPMSQFTDS DFVNILRTPF AQSTPLNRNT SSRNTEMPLV 180
  181 RKDKPDFSNG HHDLIKQITE LQDMLDKARD QARKKSRTVD ILEGKVNELT HQLNMADSKY 240
  241 NESKVANNSQ NNQIKTLKAQ NLNIHKNFQK IQSELIQTNS GLYSTKKELS ALQVRYATLL 300
  301 RKFTDQTKKI EELSLAASRS SENENTIRRL ALENHELKNS NNQLNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [347-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIDDLTREKH LIALSNNPKG DEFLSPSNLD EMVYSKEVGL SFTQPSVCIS IPAVGMRESE  60
   61 ELRELEFKCK QQKKTIEECK HISQSLQSSL TAESSRNKEL VAGFLMLSEE IGIQKWIIQS 120
  121 LSKMSPTLND FCRRYDSSMP TYEESSHECT VLSSFSDDET GLMATN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [513-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTMNNSSKDF MASQDTVNAD NPHFLATKGQ PLLLLSVMKS NILRLFYVLF LFACFYGLDY  60
   61 ILCAELLQAF LRVVFTFCEH IIILLYGRYE LVQPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits