YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC13G7.12c
Organism:	Schizosaccharomyces pombe
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC13G7.12c.

Description	E-value	Query Range	Subject Range
gi\|114687091, gi... - gi\|114687093\|ref\|XP_001144556.1\| PREDICTED: choline/ethanolamine kinase isoform 3 [Pan troglodytes],...	281.0	[0..11]	[419..20]
CHKB_MOUSE - Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3	280.0	[0..11]	[418..20]
CHKB - choline kinase beta HGNC:1938\|MIM:61... - kinase beta gi\|109451678, gi... - gi\|109451678\|emb\|CAK54710.1\| CHKB [synthetic construct], gi\|109451100\|emb\|CAK54411.1\| CHKB [syntheti...	280.0	[0..11]	[419..20]
gi\|33304029 - gi\|33304029\|gb\|AAQ02522.1\| choline kinase-like [synthetic construct]	280.0	[0..11]	[419..20]
gi\|1438883, gi\|7... - pir\|\|T08817 choline kinase (EC 2.7.1.32) CK3 - soybean (fragment), gi\|1438883\|gb\|AAC49376.1\| GmCK3p	279.0	[0..9]	[410..95]
gi\|46136047, gi\|... - gi\|46136047\|ref\|XP_389715.1\| hypothetical protein FG09539.1 [Gibberella zeae PH-1], gi\|42553812\|gb\|E...	272.0	[0..5]	[445..287]
CKI1 - Choline kinase, catalyzing the first step in phosphatidylcholine synthesis via the CDP-choline (Kenn... KICH_YEAST - Choline kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CKI1 PE=1 SV=1	268.0	[0..23]	[455..106]
gi\|73968807 - gi\|73968807\|ref\|XP_848257.1\| PREDICTED: similar to Choline/ethanolamine kinase isoform 1 [Canis fami...	266.0	[0..11]	[419..20]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNFASEVDK NNAFDSAHPS RKCKGSLDCN DPDPIFRHKV LVIIHKLAIS SWNRIPLTLC  60
   61 NKLHIKRISG ALTNAVYYVA PPEGYHAPKL LLRIYGPHVE LFINRQVELE NLKRLARHNI 120
  121 GPYLIGEFSN GRFEQYMEST TLTCKTIRDP KLSIYVGRRL CELHNFILLH PHEVLEMPAA 180
  181 WKNCLVWLPK AKAKILGRKH SLAITSEFMK TLEEDFNAYY NWFVEWSRDK KDWFGLKMVF 240
  241 SHNDTQYGNL LKIKAKKRSI PLSQKHRTLV PVDFEYAGPN LCAFDLANYF AEWMADYHHP 300
  301 THNYLMDRSR YPDFNARKLV YHAYVEQSAV INDLLEIEDA SLLKTDISDE LKNTFEKQIM 360
  361 NLEESVRAIS PAANIGWALW GILQCLEEDD EWEDLSVSSQ VADRPEKQLV EGSTVPPIGT 420
  421 SSFDYIGYSS EKFDLFYEGC AALGLNGRNR STFSYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.30103
Match:	2ig7A
Description:	No description for 2ig7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits