YRC Public Data Repository - Protein Structure Prediction

Protein:	isp5
Organism:	Schizosaccharomyces pombe
Length:	580 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for isp5.

Description	E-value	Query Range	Subject Range
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	318.0	[0..2]	[576..3]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	317.0	[0..17]	[578..83]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	317.0	[0..26]	[578..27]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	316.0	[0..40]	[576..5]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	315.0	[0..3]	[577..38]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	313.0	[0..8]	[578..13]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	310.0	[0..14]	[578..88]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNYGVSSIG TSLTPSPTGS IDEYTSKEVK HPEDVKVDAS YEKEEVGYGE LEVVPERGNL  60
   61 FQRWYRSFLP PEDG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-580]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPQKLKRTLT ARHIQMIGIG GAIGTGVWVG SKNTLREGGA ASVLICYSLV GSMVLMTVYS  60
   61 LGELAVAFPI NGSFHTYGTR FIHPSWGFTL GWNYLASFLA TYPLELITAS ICLQFWININ 120
  121 SGIWITVFIA LLCFVNMFGV RGYGEVEFFV SSLKVMAMVG FIICGIVIDC GGVRTDHRGY 180
  181 IGATIFRKNA FIHGFHGFCS VFSTAAFSYA GTEYIGIAAS ETKNPAKAFP KAVKQVFIRV 240
  241 SLFYILALFV VSLLISGRDE RLTTLSATAA SPFILALMDA KIRGLPHVLN AVILISVLTA 300
  301 ANGITYTGSR TLHSMAEQGH APKWFKYVDR EGRPLLAMAF VLCFGALGYI CESAQSDTVF 360
  361 DWLLSISNLA TLFVWLSINV SYIIYRLAFK KQGKSYDEVG YHSPFGIYGA CYGAFIIILV 420
  421 FITEFYVSIF PIGASPDAGA FFQSYLCFPV VVIVFIAHAL ITRQKFRKLS EIDLDTGFSK 480
  481 YDRLEESDKG PMTAKSLAKS VLSFCV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.6
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits