YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: tim44
Organism: Schizosaccharomyces pombe
Length: 427 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim44.

Description E-value Query
Range
Subject
Range
gi|114675079 - gi|114675079|ref|XP_512338.2| PREDICTED: translocase of inner mitochondrial membrane 44 [Pan troglod...
440.0 [0..4] [427..282]
gi|40882559, gi|... - gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster], gi|25009742|gb|AAN71045.1| AT09326p [...
423.0 [0..23] [426..60]
TIM44_MOUSE - Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=1 SV=2
417.0 [0..4] [427..35]
TIMM44 - translocase of inner mitochondrial membrane 44 homolog (yeast)
gi|123980796, gi... - gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [syntheti...
417.0 [0..4] [427..35]

Back

Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLSRKITKN ARTIVQCQRF FQTSIFSQNA APQSPIKVFM DTFRAELKKS QELQDSVKAL  60
   61 QDSSGSLSES DTFKKARDAY EKARSGTTAA SSFTGKTVGK AGAKIGSYAQ KAWESAPVQL 120
  121 SKKVISSTAN TVATGVDTAT KPVRETAFYK TIKQTMSDGS TSSRYGFYAD KEQRKKLREE 180
  181 FERRNRMFAS SARIQPNEDV QSVVVHSNPS WKNKVEQIKN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESRLVRKIQE LKKSYQESEH PIVSSIRDMA DSISGVWSRM FSETEASQVM RRFKEIDPSF  60
   61 NTEHFLQYLR EYIVPEVTEA YVKGDKEVLK TWLSEAPFSV YETTTKEYAK HGVVSVGKIL 120
  121 DIRGVDIMSQ RLLQPNDIPV FIVTFRTQEV HMFKDASSGE LVAGKDDRIQ QCTYASVFTR 180
  181 VEDELDNPET RGWRIVDFAR ARAVDYF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.522879
Match: 2fxtA
Description: No description for 2fxtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle