YRC Public Data Repository - Protein Structure Prediction

Protein:	tim23
Organism:	Schizosaccharomyces pombe
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim23.

Description	E-value	Query Range	Subject Range
TIM23 - Essential component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); involved... gi\|190408984 - gi\|190408984\|gb\|EDV12249.1\| 23 kDa mitochondrial inner membrane protein [Saccharomyces cerevisiae RM... gi\|151944545 - gi\|151944545\|gb\|EDN62823.1\| mitochondrial assembly-related protein [Saccharomyces cerevisiae YJM789] TIM23_YEAST - Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain AT...	198.0	[0..1]	[208..1]
gi\|44980502 - gi\|44980502\|gb\|AAS50435.1\| AAR070Cp [Ashbya gossypii ATCC 10895] gi\|44980502, gi\|... - gi\|45184893\|ref\|NP_982611.1\| AAR070Cp [Ashbya gossypii ATCC 10895], gi\|44980502\|gb\|AAS50435.1\| AAR07...	192.0	[0..1]	[205..58]
gi\|49652875, gi\|... - gi\|50413121\|ref\|XP_457210.1\| hypothetical protein DEHA0B05610g [Debaryomyces hansenii CBS767], gi\|49... gi\|49652875 - gi\|49652875\|emb\|CAG85205.1\| DEHA2B05742p [Debaryomyces hansenii]	181.0	[0..1]	[205..1]
gi\|50290119, gi\|... - gi\|50290119\|ref\|XP_447491.1\| hypothetical protein CAGL0I05566g [Candida glabrata CBS138], gi\|4952680... gi\|49526801 - gi\|49526801\|emb\|CAG60428.1\| unnamed protein product [Candida glabrata]	180.0	[0..2]	[202..3]
gi\|49644490, gi\|... - gi\|50310665\|ref\|XP_455354.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644490\|emb\|CAG9806... gi\|49644490\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	176.0	[0..1]	[205..1]
gi\|39954014, gi\|... - gi\|39954014\|ref\|XP_364040.1\| hypothetical protein MGG_08885 [Magnaporthe grisea 70-15], gb\|EAA46542....	176.0	[0..7]	[207..16]
gi\|49098050, gi\|... - gi\|67540356\|ref\|XP_663952.1\| hypothetical protein AN6348.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	175.0	[0..1]	[205..1]
gi\|215737360, gi... - gi\|34902184\|ref\|NP_912438.1\| Putative mitochondrial inner membrane protein [Oryza sativa (japonica c...	174.0	[0..42]	[207..24]
gi\|88183558, gi\|... - gi\|88183558\|gb\|EAQ91026.1\| hypothetical protein CHGG_02961 [Chaetomium globosum CBS 148.51], gi\|1162...	171.0	[0..8]	[205..32]
gi\|115384460, gi... - gi\|115384460\|ref\|XP_001208777.1\| hypothetical protein ATEG_01412 [Aspergillus terreus NIH2624], gi\|1...	171.0	[0..3]	[205..5]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLFTRNKE EEPTSKIDSS ELQVPTEATA SDILSGSEFD PAKLHPLADL DKPLDYLLIE  60
   61 EDALSTLPGD SMAIPSRGWQ DDLCYGTGTS YLSGLAIGGL WGLNEGMKKT KDITSTRLRL 120
  121 NGILNGVTRR GPFVGNSLGV LALVYNGINS LIGYKRQKHG WENSVAAGAL TGALYKSTRG 180
  181 LRAMAISSSL VATAAGIWTL AKRSFTKRLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.065502
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits