YRC Public Data Repository - Protein Structure Prediction

Protein:	tim17
Organism:	Schizosaccharomyces pombe
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim17.

Description	E-value	Query Range	Subject Range
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	215.0	[0..5]	[162..3]
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	214.0	[0..5]	[162..53]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	214.0	[0..5]	[162..3]
TIMM17B - translocase of inner mitochondrial membrane 17 homolog B (yeast) gi\|55662945 - gi\|55662945\|ref\|XP_521050.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	213.0	[0..5]	[162..3]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	211.0	[0..5]	[162..3]
gi\|76659462 - gi\|76659462\|ref\|XP_873411.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	207.0	[0..5]	[161..3]
gi\|68365546 - gi\|68365546\|ref\|XP_690636.1\| PREDICTED: similar to protein translocase [Danio rerio]	199.0	[0..5]	[160..3]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASADHTRDP CPYVILNDFG AAFSMGTIGG AIWHSIKGWR NSPPGEKRIS AIAAAKTRAP  60
   61 VLGGNFGVWG GLFSTFDCAV KGVRRKEDPW NAIIAGFFTG GALAVRGGWR ATRNGAIGCA 120
  121 CILAVFEGLG IALGRMNAEY NRPVAPVIPD APASGSTSAA PAAV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.721246
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits